PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla020392
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family ERF
Protein Properties Length: 309aa    MW: 34814.1 Da    PI: 4.5873
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla020392genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.71.4e-18110157152
        AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkk 52 
                s+y+GVr+++ +g+W+AeIrd + +   r r++lg+++taeeA +a++  r++
  Cla020392 110 SKYRGVRQRS-WGKWAAEIRDpF-K---RSRVWLGTYDTAEEASQAYESRRLQ 157
                89*****999.**********55.3...5******************876665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0381231.0E-395302IPR017392AP2/ERF transcription factor ERF/PTI6
PfamPF008476.1E-12110160IPR001471AP2/ERF domain
SuperFamilySSF541712.09E-16110158IPR016177DNA-binding domain
CDDcd000188.55E-24110151No hitNo description
PROSITE profilePS5103220.007111168IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.0E-22111163IPR001471AP2/ERF domain
SMARTSM003804.1E-18111165IPR001471AP2/ERF domain
PRINTSPR003679.2E-11112123IPR001471AP2/ERF domain
PRINTSPR003679.2E-11134150IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 309 aa     Download sequence    Send to blast
MSYSPNQRFV SSSRKSNLLP NNFSADPKIR RKLRIICYDP DATDSSSSEG EGEIYARKFN  60
RIVHEIHLPP LKKSLESESS QNSNNENKSS KFKQSKALFK NPSSRRQSSS KYRGVRQRSW  120
GKWAAEIRDP FKRSRVWLGT YDTAEEASQA YESRRLQFEA MAAEMAVEEE GKRTGSSSSP  180
VFSESTAETT VSHTSPSSVL EWDDSTLRSH DLKEGSDSIK EETDSNMNYL QEGDQGNPFM  240
EEINMGIDFD SILADGIGMF LEDFASLENT HIFGLADDEP SGLPNWDFGD FGNDDISCWL  300
DDSINITCP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-121101631367Ethylene-responsive transcription factor ERF096
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12733KIRRKLR
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00217DAPTransfer from AT1G68550Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818960.0LN681896.1 Cucumis melo genomic scaffold, anchoredscaffold00016.
GenBankLN7132640.0LN713264.1 Cucumis melo genomic chromosome, chr_10.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004135102.10.0PREDICTED: ethylene-responsive transcription factor ERF118-like
RefseqXP_011655773.10.0PREDICTED: ethylene-responsive transcription factor ERF118-like
TrEMBLA0A0A0KWF10.0A0A0A0KWF1_CUCSA; Uncharacterized protein
STRINGXP_004159298.10.0(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF26903472
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68550.22e-35ERF family protein