PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla020369
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family G2-like
Protein Properties Length: 357aa    MW: 39026.5 Da    PI: 8.0463
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla020369genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like104.65.6e-33206261156
    G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                k+r++W++eLH+rFv+a++qLGG+++AtPk+i+elmkv+gLt+++vkSHLQkYRl+
  Cla020369 206 KQRRCWSSELHRRFVHALQQLGGPHVATPKQIRELMKVDGLTNDEVKSHLQKYRLH 261
                79****************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.606.2E-29203264IPR009057Homeodomain-like
SuperFamilySSF466893.05E-18203263IPR009057Homeodomain-like
PROSITE profilePS5129414.807203263IPR017930Myb domain
TIGRFAMsTIGR015571.1E-27206261IPR006447Myb domain, plants
PfamPF002496.4E-7208259IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 357 aa     Download sequence    Send to blast
MDFLHNFLDI RVGMDLRHYA DALDQERRKI QVFQRELPLC LELVTRAIES CRQQLSGVST  60
DSSEHTSSDG PVLEEFIPIN KPSVNSHFEI EEDEQSKPEK IELGRSDWLK SAQLWNQSPD  120
PPVTEDVAKE TTSSVVEVKK NVGGGAFQPF QKEKTTPLKT ESVVVGKSDG SSPIPEATTS  180
STAETASKGG GGTSKREDKE SQTQRKQRRC WSSELHRRFV HALQQLGGPH VATPKQIREL  240
MKVDGLTNDE VKSHLQKYRL HARRPTNSAM QDSGSSSAPQ QFVVVGSIWV PPPPPPKYTV  300
ATAAKARNGI YAPVATAVRR QTTAEEGKAS HSGGVVHSNS PATSSCTHTT TTSPSAA
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in phosphate signaling in roots. {ECO:0000250|UniProtKB:Q9FX67}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00160DAPTransfer from AT1G25550Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818961e-115LN681896.1 Cucumis melo genomic scaffold, anchoredscaffold00016.
GenBankLN7132641e-115LN713264.1 Cucumis melo genomic chromosome, chr_10.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008446559.10.0PREDICTED: LOW QUALITY PROTEIN: transcription factor LUX
SwissprotQ9FPE82e-89HHO3_ARATH; Transcription factor HHO3
TrEMBLA0A1S3BG560.0A0A1S3BG56_CUCME; LOW QUALITY PROTEIN: transcription factor LUX
STRINGXP_008446559.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF39183363
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68670.12e-86G2-like family protein
Publications ? help Back to Top
  1. Nagarajan VK,Satheesh V,Poling MD,Raghothama KG,Jain A
    Arabidopsis MYB-Related HHO2 Exerts a Regulatory Influence on a Subset of Root Traits and Genes Governing Phosphate Homeostasis.
    Plant Cell Physiol., 2016. 57(6): p. 1142-52
    [PMID:27016098]