PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla020368
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family RAV
Protein Properties Length: 348aa    MW: 38688.5 Da    PI: 9.7012
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla020368genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP242.31.8e-1359107155
        AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                s+ykGV   + +grW A+I++      ++r++lg+f  ++eAa+a++ a+++++g
  Cla020368  59 SRYKGVVPQP-NGRWGAQIYEK-----HQRVWLGTFNEEDEAARAYDVAAQRFRG 107
                78****9888.8*********3.....5**********99*************98 PP
2B3955e-30187288196
                EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
         B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                f+k+ tpsdv+k++rlv+pk++ae++      +  + ++  l +ed  g++W+++++y+++s++yvltkGW++Fvk+++Lk+gD+v F  +  ++++l++
  Cla020368 187 FEKAVTPSDVGKLNRLVIPKQHAEKNfplqtgSTASSKGLLLNFEDGGGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKNLKAGDIVSFLKSTGQDKQLYI 286
                89*************************9998733334677899999999***************************************954436666666 PP

                EE CS
         B3  95 kv 96 
                 +
  Cla020368 287 EW 288
                55 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541712.22E-1759115IPR016177DNA-binding domain
PfamPF008474.2E-959107IPR001471AP2/ERF domain
CDDcd000189.74E-2659114No hitNo description
PROSITE profilePS5103220.48160115IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.3E-2060115IPR001471AP2/ERF domain
SMARTSM003801.6E-2860121IPR001471AP2/ERF domain
Gene3DG3DSA:2.40.330.103.2E-40181295IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.15E-29183279IPR015300DNA-binding pseudobarrel domain
CDDcd100171.28E-27186274No hitNo description
SMARTSM010192.0E-22187292IPR003340B3 DNA binding domain
PfamPF023621.1E-27187288IPR003340B3 DNA binding domain
PROSITE profilePS5086314.057187292IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 348 aa     Download sequence    Send to blast
MDGICIDEST STESQSPVVK SPPPETSLCR VGSGVTSVVL DSDSSGGGVE AESRKLPSSR  60
YKGVVPQPNG RWGAQIYEKH QRVWLGTFNE EDEAARAYDV AAQRFRGRDA VTNFKPLAHG  120
GEEDDAVSAF LNSHSKAEIV DMLRKHTYLD ELHQSKRNAG LSGWDRKRNR SLPGLDTDPE  180
TSRELLFEKA VTPSDVGKLN RLVIPKQHAE KNFPLQTGST ASSKGLLLNF EDGGGKVWRF  240
RYSYWNSSQS YVLTKGWSRF VKEKNLKAGD IVSFLKSTGQ DKQLYIEWKA RKTSTATGSD  300
MNPVQTVRLF GVDIIKVSPH SGCSEKRRRE LEFLASQCTK KQRIVGAM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A4e-5718430211123DNA-binding protein RAV1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Transcriptional repressor of flowering time on long day plants. Acts directly on FT expression by binding 5'-CAACA-3' and 5'-CACCTG-3 sequences (Probable). Functionally redundant with TEM1. {ECO:0000250, ECO:0000269|PubMed:18718758, ECO:0000305}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00025PBMTransfer from AT1G68840Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818960.0LN681896.1 Cucumis melo genomic scaffold, anchoredscaffold00016.
GenBankLN7132640.0LN713264.1 Cucumis melo genomic chromosome, chr_10.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004135113.10.0PREDICTED: AP2/ERF and B3 domain-containing transcription repressor RAV2-like
SwissprotP822801e-141RAV2_ARATH; AP2/ERF and B3 domain-containing transcription repressor RAV2
TrEMBLA0A0A0KR170.0A0A0A0KR17_CUCSA; DNA-binding protein RAV1
STRINGXP_004171558.10.0(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF29203274
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68840.21e-135related to ABI3/VP1 2
Publications ? help Back to Top
  1. Matías-Hernández L,Aguilar-Jaramillo AE,Marín-González E,Suárez-López P,Pelaz S
    RAV genes: regulation of floral induction and beyond.
    Ann. Bot., 2014. 114(7): p. 1459-70
    [PMID:24812253]
  2. Marín-González E, et al.
    SHORT VEGETATIVE PHASE Up-Regulates TEMPRANILLO2 Floral Repressor at Low Ambient Temperatures.
    Plant Physiol., 2015. 169(2): p. 1214-24
    [PMID:26243615]
  3. Sun YW, et al.
    Attenuation of Histone Methyltransferase KRYPTONITE-mediated transcriptional gene silencing by Geminivirus.
    Sci Rep, 2015. 5: p. 16476
    [PMID:26602265]
  4. Mittal A,Jiang Y,Ritchie GL,Burke JJ,Rock CD
    AtRAV1 and AtRAV2 overexpression in cotton increases fiber length differentially under drought stress and delays flowering.
    Plant Sci., 2015. 241: p. 78-95
    [PMID:26706061]
  5. Matías-Hernández L, et al.
    TEMPRANILLO Reveals the Mesophyll as Crucial for Epidermal Trichome Formation.
    Plant Physiol., 2016. 170(3): p. 1624-39
    [PMID:26802039]
  6. Li P, et al.
    The Arabidopsis UGT87A2, a stress-inducible family 1 glycosyltransferase, is involved in the plant adaptation to abiotic stresses.
    Physiol Plant, 2017. 159(4): p. 416-432
    [PMID:27747895]