PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Cla020366 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
|
||||||||
Family | NAC | ||||||||
Protein Properties | Length: 410aa MW: 46090.5 Da PI: 4.931 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 105 | 9.3e-33 | 49 | 188 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk.....lelee.....vikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknr.atk....sgyWka 85 lp+G++F+P+d+e++++ L+k g + + + v+++ +i++++P++Lp vk++ + +fF+++ k+y+tg+rk+r +t+ + +W++ Cla020366 49 LPRGVKFDPSDQEIIWHLLAKVGIGGSrphpfI---DefiptVFEDDGICYTHPQKLP-GVKQDGSVSHFFHRAIKAYNTGTRKRRkITDddfgDVRWHK 144 799************888887744444476552...233333577778**********.677888899******************55546655788*** PP NAM 86 tgkdkevlskkgelvglkktLvfykg..rapkgektdWvmheyrl 128 tg++k+v+ +g ++g+kk++v+y + ++ekt+Wvmh+y+l Cla020366 145 TGRTKPVVI-DGVQKGCKKIMVLYMSfaKGGRAEKTNWVMHQYHL 188 *********.99************6522666778*********98 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 6.67E-39 | 40 | 207 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 31.137 | 49 | 207 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.1E-13 | 50 | 188 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0000077 | Biological Process | DNA damage checkpoint | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010332 | Biological Process | response to gamma radiation | ||||
GO:0040020 | Biological Process | regulation of meiotic nuclear division | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 410 aa Download sequence Send to blast |
VHVCACVKFV VHNQVKMSIN DHTTSRISND NRSQRQVAGV NVAQEWPGLP RGVKFDPSDQ 60 EIIWHLLAKV GIGGSRPHPF IDEFIPTVFE DDGICYTHPQ KLPGVKQDGS VSHFFHRAIK 120 AYNTGTRKRR KITDDDFGDV RWHKTGRTKP VVIDGVQKGC KKIMVLYMSF AKGGRAEKTN 180 WVMHQYHLGT EEDERDGEYV ISKIFHQQQN VKQGEVIEQE VPEIIDAIKV DPRTPKSVTP 240 EPPRIESRCV NVDPEQDSVI TSTSALAEVP PEFEKSDKHD MIKPDGCSNE VIDDNDNDIE 300 EEPKWWEGES QNILDSQQLV EALSLCDDLL QSQSPPRDGH SNHGASGSKS CFSEYAKLGP 360 EDLKKDLEEC QNLVLDPANI ELDTPPEFRL SQLDFGSQES FLAWGGKAAE |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription factor regulating the transcriptional activation response to gamma irradiation (PubMed:19549833). Required for stem-cell death induced by UVB or by gamma irradiation (PubMed:20634150). Not required for ATM activation, but participates in pathways governed by both ATM and ATR sensor kinases (PubMed:19549833). Involved in DNA damage response (DDR) system that regulates cell cycle arrest (PubMed:24399300). Functional homolog of animal p53 (PubMed:24736489). Regulates SMR5 and SMR7 transcription (PubMed:24399300). Regulates DNA repair and cytokinin signaling separately and plays a key role in controlling lateral root formation under genotoxic stress. {ECO:0000269|PubMed:19549833, ECO:0000269|PubMed:20634150, ECO:0000269|PubMed:24399300, ECO:0000305|PubMed:24736489}. |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Not induced by zeocin or ionizing radiation treatment. {ECO:0000269|PubMed:23907539}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | KT215862 | 0.0 | KT215862.1 Momordica charantia cultivar 24-K NAC domain-containing protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_008446555.1 | 0.0 | PREDICTED: NAC domain-containing protein 8 | ||||
Swissprot | Q6NQK2 | 1e-155 | NAC8_ARATH; SUPPRESSOR OF GAMMA RESPONSE 1 | ||||
TrEMBL | A0A1S3BEU2 | 0.0 | A0A1S3BEU2_CUCME; NAC domain-containing protein 8 | ||||
STRING | XP_004159303.1 | 0.0 | (Cucumis sativus) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5662 | 33 | 54 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G25580.1 | 1e-142 | NAC family protein |