PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cla020244 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
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Family | ERF | ||||||||
Protein Properties | Length: 154aa MW: 17320.4 Da PI: 10.3131 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 53.4 | 6.2e-17 | 12 | 61 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ++kG+r +k +g+WvAeIr+p +kr r++lg++ ++ Aa+a++aa l+g Cla020244 12 QFKGIRMRK-WGKWVAEIREP---NKRSRIWLGSYSSPVAAARAYDAAVFHLRG 61 79*****99.**********9...336**********************99998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 2.20E-18 | 11 | 70 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 3.3E-29 | 12 | 70 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.24E-20 | 12 | 70 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 21.562 | 12 | 69 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.2E-33 | 12 | 75 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 2.4E-10 | 13 | 61 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.2E-10 | 13 | 24 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.2E-10 | 51 | 71 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 154 aa Download sequence Send to blast |
MKEKNEERKL KQFKGIRMRK WGKWVAEIRE PNKRSRIWLG SYSSPVAAAR AYDAAVFHLR 60 GPTARLNFPD FFTTVDRSFP LSAAAVRKIA AEVGAHVDAL ESSLRHHFVN SSDQSPNPTK 120 LRSSSSGFSD RVDLNKFPDP EDADGDCAST HWTS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 2e-14 | 9 | 69 | 2 | 63 | ATERF1 |
3gcc_A | 2e-14 | 9 | 69 | 2 | 63 | ATERF1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681913 | 1e-111 | LN681913.1 Cucumis melo genomic scaffold, anchoredscaffold00045. | |||
GenBank | LN713265 | 1e-111 | LN713265.1 Cucumis melo genomic chromosome, chr_11. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004149688.1 | 1e-80 | PREDICTED: ethylene-responsive transcription factor ERF011-like | ||||
Swissprot | O22174 | 4e-53 | ERF08_ARATH; Ethylene-responsive transcription factor ERF008 | ||||
TrEMBL | A0A0A0LLV5 | 3e-79 | A0A0A0LLV5_CUCSA; Uncharacterized protein | ||||
STRING | XP_004149688.1 | 5e-80 | (Cucumis sativus) | ||||
STRING | XP_004168033.1 | 5e-80 | (Cucumis sativus) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1290 | 32 | 106 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G23340.1 | 8e-49 | DREB and EAR motif protein 3 |
Publications ? help Back to Top | |||
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