PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cla020170

Organism

Citrullus lanatus

Taxonomic ID

3654

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus

Family

TALE

Protein Properties

Length: 647aa MW: 71018.4 Da PI: 6.6988

Description

TALE family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cla020170	genome	ICuGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	28.8	2.1e-09	445	482	19	54
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yps +++ LA+++gL+ +qV++WF N R + Cla020170 445 FEHflHPYPSDADKHLLARQTGLSRNQVSNWFINARVR 482 664559******************************88 PP
2	BELL	93	2.8e-30	319	373	18	72
BELL 18 eVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 +Vd+rY++y+eq+q+v++sF++v+g g+a pYtslA+ka+SrhFrcLkd i+ q+ Cla020170 319 KVDRRYNHYCEQMQMVVNSFDEVMGFGAAVPYTSLAQKAMSRHFRCLKDVISAQL 373 7***************************************************996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00574	2.3E-62	233	371	IPR006563	POX domain
Pfam	PF07526	1.5E-40	239	370	IPR006563	POX domain
PROSITE profile	PS50071	12.568	423	486	IPR001356	Homeobox domain
SMART	SM00389	1.2E-9	426	490	IPR001356	Homeobox domain
CDD	cd00086	1.29E-12	426	487	No hit	No description
SuperFamily	SSF46689	3.12E-17	427	493	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	7.4E-29	429	492	IPR009057	Homeodomain-like
Pfam	PF05920	3.2E-18	443	482	IPR008422	Homeobox KN domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009965	Biological Process	leaf morphogenesis
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 647 aa Download sequence Send to blast
MSQQDYQQAA AAAAAAGFFT PFCNGYDRSS TAHQDSQQHY QHIAHQIRKE KLRLQGFDPQ 60 PHPPSLVGID DDNDDQSAVH HVYDSTGILS EMFNFPPPPP PQPPQTDWYG NRQTINAADS 120 AVAMQLFLMN PNPRSPSPPP PPPSSTLHML LPNPSSGGSF GQFTWGVVPE QETGDHSSSN 180 PNEGRLSLSL SSSLEAAKAE ELRMGDSTNG LLYHHHHQPQ HVHVGSIGSS NPLGVVNLLR 240 NSKYVKAAQE LLEEFCSVGR GQFKKNNNHD NKFNNKSNLP SNSNSHGGGG DGTGVSSSST 300 KDHQPALSAA DRIDHQRRKV DRRYNHYCEQ MQMVVNSFDE VMGFGAAVPY TSLAQKAMSR 360 HFRCLKDVIS AQLKHSCEML GEKDGGVSGR ASGITKGETP RLKLLEQSLR QQRAFHQMGI 420 MEQEAWRPQR GLPERSVNIL RAWLFEHFLH PYPSDADKHL LARQTGLSRN QVSNWFINAR 480 VRLWKPMVEE MYQQEAKQDD DDDDNNTDED TQTNSQQITT NNNPLSQTPT PPTSSAAPPP 540 PSSSAASPPK IPDHPSPFSA AATHCFPATH YDSDLHDTCR RLTVLPAPDL QFGTTTSSAT 600 SDIPGPTTLI RFGTTAGDVS LTLGLRHAGN IPDKTSSFSL RSEFGGC

Sequence ? help Back to Top

Protein Sequence Length: 647 aa Download sequence Send to blast

MSQQDYQQAA AAAAAAGFFT PFCNGYDRSS TAHQDSQQHY QHIAHQIRKE KLRLQGFDPQ  60
PHPPSLVGID DDNDDQSAVH HVYDSTGILS EMFNFPPPPP PQPPQTDWYG NRQTINAADS  120
AVAMQLFLMN PNPRSPSPPP PPPSSTLHML LPNPSSGGSF GQFTWGVVPE QETGDHSSSN  180
PNEGRLSLSL SSSLEAAKAE ELRMGDSTNG LLYHHHHQPQ HVHVGSIGSS NPLGVVNLLR  240
NSKYVKAAQE LLEEFCSVGR GQFKKNNNHD NKFNNKSNLP SNSNSHGGGG DGTGVSSSST  300
KDHQPALSAA DRIDHQRRKV DRRYNHYCEQ MQMVVNSFDE VMGFGAAVPY TSLAQKAMSR  360
HFRCLKDVIS AQLKHSCEML GEKDGGVSGR ASGITKGETP RLKLLEQSLR QQRAFHQMGI  420
MEQEAWRPQR GLPERSVNIL RAWLFEHFLH PYPSDADKHL LARQTGLSRN QVSNWFINAR  480
VRLWKPMVEE MYQQEAKQDD DDDDNNTDED TQTNSQQITT NNNPLSQTPT PPTSSAAPPP  540
PSSSAASPPK IPDHPSPFSA AATHCFPATH YDSDLHDTCR RLTVLPAPDL QFGTTTSSAT  600
SDIPGPTTLI RFGTTAGDVS LTLGLRHAGN IPDKTSSFSL RSEFGGC

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3k2a_A	3e-16	432	490	5	63	Homeobox protein Meis2
3k2a_B	3e-16	432	490	5	63	Homeobox protein Meis2
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that establishes leaf shape by repressing growth in specific subdomains of the leaf. Negatively regulates knox homeobox gene KNAT1/BP expression.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023513245.1	0.0	BEL1-like homeodomain protein 4
Swissprot	Q9SW80	1e-141	BLH2_ARATH; BEL1-like homeodomain protein 2
TrEMBL	A0A0A0LM01	0.0	A0A0A0LM01_CUCSA; Uncharacterized protein
STRING	XP_004148064.1	0.0	(Cucumis sativus)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3524	32	57

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G36870.2	1e-125	BEL1-like homeodomain 2

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]