PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cla020050 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
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Family | TCP | ||||||||
Protein Properties | Length: 257aa MW: 26673.7 Da PI: 10.5046 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 123.3 | 2.7e-38 | 34 | 127 | 3 | 93 |
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssg....kaaks 93 +kk +++++h+kv+gR+RR+R+++ caar+F+L++eLG+++d++tieWLl+qa+p+i+++tgt++++a+++ ++s s+ ++ s++ ++ +s Cla020050 34 VKKPPSKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTTPANFS-SVSLSVRGNGGSASlsspSSTTS 127 79******************************************************************888.33333333322222322222222 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 3.3E-34 | 39 | 126 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 28.209 | 39 | 93 | IPR017887 | Transcription factor TCP subgroup |
Sequence ? help Back to Top |
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Protein Sequence Length: 257 aa Download sequence Send to blast |
MSNSDHTTNA NGVSNAAAIE THKNQPSSNG ALVVKKPPSK DRHSKVDGRG RRIRMPIICA 60 ARVFQLTREL GHKSDGQTIE WLLRQAEPSI IAATGTGTTP ANFSSVSLSV RGNGGSASLS 120 SPSSTTSTLS LSRPQALSGP TPFILGKRVR SDDDGKDDGL GVGQAVGSIV GPTGPGGYWA 180 IPARPDYGQV WSFAAAAPSE MVVQPGGISQ QASLFAQQQQ PIREASAARV GNYLPGHLNL 240 LASLSGGGSG RREDDPR |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681896 | 0.0 | LN681896.1 Cucumis melo genomic scaffold, anchoredscaffold00016. | |||
GenBank | LN713264 | 0.0 | LN713264.1 Cucumis melo genomic chromosome, chr_10. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008445886.1 | 1e-149 | PREDICTED: transcription factor TCP7-like | ||||
Swissprot | Q9FMX2 | 9e-90 | TCP7_ARATH; Transcription factor TCP7 | ||||
TrEMBL | A0A1S3BDR1 | 1e-148 | A0A1S3BDR1_CUCME; transcription factor TCP7-like | ||||
STRING | XP_008445886.1 | 1e-149 | (Cucumis melo) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5469 | 31 | 53 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G23280.1 | 3e-62 | TCP family protein |