PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cla019973 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
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Family | TALE | ||||||||
Protein Properties | Length: 389aa MW: 44033.6 Da PI: 5.0367 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 27.8 | 4.4e-09 | 314 | 348 | 21 | 55 |
HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS Homeobox 21 knrypsaeereeLAkklgLterqVkvWFqNrRake 55 k +yp++ee+ +L+ +gL+++q+ +WF N+R ++ Cla019973 314 KWPYPTEEEKSKLSVVTGLDQKQINNWFINQRKRH 348 569*****************************885 PP | |||||||
2 | ELK | 34.4 | 4.7e-12 | 268 | 289 | 1 | 22 |
ELK 1 ELKhqLlrKYsgyLgsLkqEFs 22 +LK++Ll+KYsgyL+sLk+EF+ Cla019973 268 DLKEMLLKKYSGYLSSLKKEFL 289 6********************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01255 | 1.1E-21 | 58 | 102 | IPR005540 | KNOX1 |
Pfam | PF03790 | 5.7E-21 | 60 | 101 | IPR005540 | KNOX1 |
SMART | SM01256 | 1.8E-21 | 105 | 156 | IPR005541 | KNOX2 |
Pfam | PF03791 | 1.1E-20 | 109 | 155 | IPR005541 | KNOX2 |
SMART | SM01188 | 5.9E-6 | 268 | 289 | IPR005539 | ELK domain |
Pfam | PF03789 | 3.3E-9 | 268 | 289 | IPR005539 | ELK domain |
PROSITE profile | PS51213 | 10.947 | 268 | 288 | IPR005539 | ELK domain |
PROSITE profile | PS50071 | 12.179 | 288 | 351 | IPR001356 | Homeobox domain |
SMART | SM00389 | 4.2E-11 | 290 | 355 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 3.76E-18 | 290 | 360 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 4.8E-25 | 293 | 351 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 7.48E-12 | 300 | 351 | No hit | No description |
Pfam | PF05920 | 1.3E-16 | 308 | 347 | IPR008422 | Homeobox KN domain |
PROSITE pattern | PS00027 | 0 | 326 | 349 | IPR017970 | Homeobox, conserved site |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 389 aa Download sequence Send to blast |
MDEFYRLSNS VIASYSNGVV GGEAIASTSC GGIHEALMVD NDMLQLEAEA TTGLNMSDMI 60 KTQIVNHPLY PKLVSAYIEC QKVGAPPQVA SLLEEIGREN HPPRSSIELG ADPQLDNFME 120 SYCEVLHQYK NELSKPFDEA TMFLTNIELE LSNLCKGSFT VTSDSRSAMN AFVLATIFGR 180 RNGVDNDGRY HYPFCNDESC IYYSKESYSF FGESTSKEEW KLIKALEWEG KGMRYEVAGT 240 PEEEPSSYGE VEMPGNHESF CTQKTNQDLK EMLLKKYSGY LSSLKKEFLK KRKKEKLPKD 300 ARMALFDWWN THYKWPYPTE EEKSKLSVVT GLDQKQINNW FINQRKRHWK PPEDMRFVLM 360 DGAGAGAGAG ECIKGSNFYD NGETGGHVI |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 283 | 292 | LKKEFLKKRK |
2 | 289 | 293 | KKRKK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that may be involved in shoot formation during embryogenesis. {ECO:0000269|PubMed:10080693}. | |||||
UniProt | Probable transcription factor that may be involved in shoot formation during embryogenesis. {ECO:0000269|PubMed:10080693, ECO:0000269|PubMed:10488233}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681847 | 1e-101 | LN681847.1 Cucumis melo genomic scaffold, anchoredscaffold00003. | |||
GenBank | LN713259 | 1e-101 | LN713259.1 Cucumis melo genomic chromosome, chr_5. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022946412.1 | 1e-163 | homeobox protein knotted-1-like 1 isoform X1 | ||||
Refseq | XP_022946413.1 | 1e-163 | homeobox protein knotted-1-like 1 isoform X1 | ||||
Swissprot | A2Y007 | 2e-47 | KNOSA_ORYSI; Homeobox protein knotted-1-like 10 | ||||
Swissprot | Q7GDL5 | 2e-47 | KNOSA_ORYSJ; Homeobox protein knotted-1-like 10 | ||||
TrEMBL | A0A0A0LGZ6 | 1e-121 | A0A0A0LGZ6_CUCSA; Uncharacterized protein | ||||
STRING | XP_004158713.1 | 1e-122 | (Cucumis sativus) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF620 | 34 | 125 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G70510.1 | 5e-37 | KNOTTED-like from Arabidopsis thaliana 2 |