PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla019827
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family GeBP
Protein Properties Length: 377aa    MW: 43394.4 Da    PI: 4.899
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla019827genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF573881.2e-27109205597
     DUF573   5 rlwseeDeivlLqGlidfkaktgk....spsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiWg 97 
                 +w++eDei lL+G+++++ ++       +++d +afy+++k ++++   k+ql++K+rrLK+K++  ++k++ g++p+f++ h+q++f++s+kiWg
  Cla019827 109 TIWTNEDEIKLLRGFLEYALENRIfghrLQQQDANAFYRKIKPKLQLCCDKNQLIDKLRRLKRKYHITSSKIDCGEKPAFKSLHEQSTFDISRKIWG 205
                69****************99987767656677****************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045043.5E-25109205IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 377 aa     Download sequence    Send to blast
MTWPLSGWIF SSSSSSSMEE DQNTQLSDEH ETQLNDEDDE YQADSYREDA QNNEQNAAVS  60
DETDAADLHQ SKTNSFSPIV DHIPTAIAIP ANATNNIVTV AIPARRRTTI WTNEDEIKLL  120
RGFLEYALEN RIFGHRLQQQ DANAFYRKIK PKLQLCCDKN QLIDKLRRLK RKYHITSSKI  180
DCGEKPAFKS LHEQSTFDIS RKIWGRNSGK KQTSAEDSIL DEVLADINPN FNEIKVKTEN  240
LEDEYEERDD LQQSIKRRRT AFLSGEASNS NEIPERPSSI LDDIGKISGL VEEVAKGCLT  300
PFFKEMMNMG WPPVGLARRI PSLRGGEEAE ERWRKQHAME MEVYLKRLEL VQEEIRISLE  360
ELRSNEERSK SKLKNDN
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818470.0LN681847.1 Cucumis melo genomic scaffold, anchoredscaffold00003.
GenBankLN7132590.0LN713259.1 Cucumis melo genomic chromosome, chr_5.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011648769.10.0PREDICTED: mediator-associated protein 1
TrEMBLE5GBR90.0E5GBR9_CUCME; Uncharacterized protein
STRINGXP_004139376.10.0(Cucumis sativus)
STRINGXP_004156488.10.0(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2481633
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28040.12e-43DNA-binding storekeeper protein-related transcriptional regulator