PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla019756
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family WRKY
Protein Properties Length: 400aa    MW: 43272.4 Da    PI: 6.4027
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla019756genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY96.41.9e-30198256259
                --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
       WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                +D ++WrKYGqK++kgs++pr+YYrC+s+ gC+++k+vers+++p++++itY++eHnh+
  Cla019756 198 SDLWAWRKYGQKPIKGSPYPRGYYRCSSSkGCSARKQVERSRTNPNMLVITYTSEHNHP 256
                699************************998****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.4E-30190258IPR003657WRKY domain
PROSITE profilePS5081132.535192258IPR003657WRKY domain
SuperFamilySSF1182904.84E-26195258IPR003657WRKY domain
SMARTSM007746.0E-37197257IPR003657WRKY domain
PfamPF031061.7E-25199256IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009555Biological Processpollen development
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 400 aa     Download sequence    Send to blast
MDNNYQQAGD LTDVIRLSSA AVAGGLSSEF SLDPSSSDRR LWPHLTADES SMNFGDPLLF  60
PTSSARDPFL HPHFSAFNLA SDGGSEGLAA VDQPSNLLSH MLQISPSSGD GVISTPPCES  120
FATAVGNSPC SASACSGGVV LPTGGSNPLC LMENSGIQIS SPRNSTTKRR KSQVKKVVCI  180
PAPAPANNRS SSGEVVPSDL WAWRKYGQKP IKGSPYPRGY YRCSSSKGCS ARKQVERSRT  240
NPNMLVITYT SEHNHPWPTQ RNALAGSTRS HPSRTPTTPT ARKTSPKHER TNNNQPTTTL  300
KEEEMDADQT TEKAIVTTTN DHQEDGDHQN FPYDLIFTEF ADHDNDHDHH HLSADPLNNI  360
IFSSHGFSTG NGEGSKDPFL ELYDWADNSN GSLFKEAKGG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B3e-25171259280Disease resistance protein RRS1
5w3x_D3e-25171259280Disease resistance protein RRS1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011659293.10.0PREDICTED: probable WRKY transcription factor 14
TrEMBLA0A0A0LYP60.0A0A0A0LYP6_CUCSA; Uncharacterized protein
STRINGXP_004158081.10.0(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF54303454
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34830.17e-69WRKY DNA-binding protein 35