PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cla019706 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
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Family | Dof | ||||||||
Protein Properties | Length: 173aa MW: 18688.8 Da PI: 9.2249 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 124.4 | 3.6e-39 | 17 | 74 | 4 | 61 |
zf-Dof 4 kalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 +++kcprC+s+ntkfCyynnyslsqPryfCk+CrryWt+GG+lrnvP+Ggg+rk+k+ Cla019706 17 QKQKCPRCESSNTKFCYYNNYSLSQPRYFCKSCRRYWTHGGTLRNVPIGGGSRKSKRP 74 6789***************************************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 9.0E-24 | 7 | 73 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 5.1E-34 | 17 | 73 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 28.919 | 19 | 73 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 21 | 57 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 173 aa Download sequence Send to blast |
MQGAPNEDQT KTSTIIQKQK CPRCESSNTK FCYYNNYSLS QPRYFCKSCR RYWTHGGTLR 60 NVPIGGGSRK SKRPKTTMPS SSASSDTTTL TPPPPAAGGL PLDHLATSYS SAAFLPSLDV 120 GAYSFGGLPW TTSITNTIIH SSSSGNNQNS SLDIENNSCT LLPNHLPPYA HPP |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681932 | 5e-99 | LN681932.1 Cucumis melo genomic scaffold, anchoredscaffold00001. | |||
GenBank | LN713266 | 5e-99 | LN713266.1 Cucumis melo genomic chromosome, chr_12. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008442727.1 | 2e-69 | PREDICTED: dof zinc finger protein DOF2.2-like | ||||
Swissprot | Q9SVC5 | 1e-31 | DOF35_ARATH; Dof zinc finger protein DOF3.5 | ||||
TrEMBL | A0A1S3B6E2 | 5e-68 | A0A1S3B6E2_CUCME; dof zinc finger protein DOF2.2-like | ||||
STRING | XP_008442727.1 | 9e-69 | (Cucumis melo) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4145 | 32 | 58 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G28510.1 | 2e-31 | Dof family protein |