PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cla019699 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
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Family | ERF | ||||||||
Protein Properties | Length: 200aa MW: 22094.8 Da PI: 10.2734 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 62.9 | 6.9e-20 | 22 | 71 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +++GVr ++ +gr++AeIrdp k+ r++lg+f+taeeAa+a++aa+++++g Cla019699 22 HFRGVRKRP-WGRYAAEIRDPA---KKSRVWLGTFDTAEEAARAYDAAARQFRG 71 69*******.**********83...36************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00380 | 8.5E-37 | 22 | 85 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 3.2E-32 | 22 | 79 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 2.0E-13 | 22 | 71 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.37E-22 | 22 | 80 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 2.01E-18 | 22 | 79 | No hit | No description |
PROSITE profile | PS51032 | 23.868 | 22 | 79 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.7E-11 | 23 | 34 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.7E-11 | 45 | 61 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 200 aa Download sequence Send to blast |
MAPRDKVKAA AAAPGCKDKE VHFRGVRKRP WGRYAAEIRD PAKKSRVWLG TFDTAEEAAR 60 AYDAAARQFR GAKAKTNFPF PVTLNDLNLS PSRSSTVESS SRDPTDFDLN QDAAGSRPPF 120 PQFGGGIFPQ PNHLLFFDHP IFRNGMKSGV IFDRHRLKAV QCGGVQSDSD SSSVINLNQN 180 DQKPRRVLDL DLNFPPPDSA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 5e-22 | 19 | 82 | 2 | 66 | ATERF1 |
3gcc_A | 5e-22 | 19 | 82 | 2 | 66 | ATERF1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Probably acts as a transcriptional repressor and may regulate other AtERFs (By similarity). {ECO:0000250}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Strongly and quickly induced by ethylene. {ECO:0000269|PubMed:10945353}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681932 | 1e-180 | LN681932.1 Cucumis melo genomic scaffold, anchoredscaffold00001. | |||
GenBank | LN713266 | 1e-180 | LN713266.1 Cucumis melo genomic chromosome, chr_12. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004146656.1 | 9e-93 | PREDICTED: ethylene-responsive transcription factor 11 | ||||
Swissprot | Q9LW49 | 2e-38 | ERF4_NICSY; Ethylene-responsive transcription factor 4 | ||||
TrEMBL | A0A0A0LXG4 | 2e-91 | A0A0A0LXG4_CUCSA; Uncharacterized protein | ||||
STRING | XP_004146656.1 | 4e-92 | (Cucumis sativus) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF24812 | 3 | 3 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G44210.1 | 5e-28 | erf domain protein 9 |