PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cla019693

Organism

Citrullus lanatus

Taxonomic ID

3654

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus

Family

NAC

Protein Properties

Length: 336aa MW: 37800.4 Da PI: 9.318

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cla019693	genome	ICuGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	88.2	1.5e-27	57	214	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk......leleev.ikev.diykvePwdLpk................kvkaeekew..yfFskrdkkyatgkrk 74 lp+G++F+Ptd+e++ e+L++k+ ++ ++++ ++ +i++++P++Lp k+++e+++ fF ++ +y+tg+rk Cla019693 57 LPAGVKFDPTDQEIL-EHLEAKAISDVrklhplIDEFIPtLEGEnGICYTHPQKLPVrgihglgwrhffgpirKFRSEQRRAnpAFFPPT--TYPTGTRK 153 799*********9.889998766653664442222222333336******5355666666665555533333332222455443..45567777 PP NAM 75 nra......tksgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128 +r+ ++ +W++tgk+++v+ +g+++g kk+Lv+y gr++k+ekt+Wvmh+y+l Cla019693 154 RRKvhtdeeGNETRWHKTGKTRPVFI-GGAVKGFKKILVLYtnYGRQRKPEKTNWVMHQYHL 214 77556554434788********.9*********66589************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	7.72E-32	51	233	IPR003441	NAC domain
PROSITE profile	PS51005	28.527	57	233	IPR003441	NAC domain
Pfam	PF02365	8.0E-14	58	214	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 336 aa Download sequence Send to blast
MTWCSGSDDE SSPSIHQLTK SNDASILHHP SPAVRCPSCG HQIQLQDQAG IHDLPGLPAG 60 VKFDPTDQEI LEHLEAKAIS DVRKLHPLID EFIPTLEGEN GICYTHPQKL PVRGIHGLGW 120 RHFFGPIRKF RSEQRRANPA FFPPTTYPTG TRKRRKVHTD EEGNETRWHK TGKTRPVFIG 180 GAVKGFKKIL VLYTNYGRQR KPEKTNWVMH QYHLGNNEEE KDGELVVSKV FYQTQPRQCS 240 STAAATNNNN PLLQSEIKFK NAANHHRHHP DSTATGAVDY YNAAASNNNT NFISFDHNSE 300 PAVPQLLPNL VLSGDGSTFI RFPPADTTKR KLDRKI

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that plays a regulatory role in the development of secondary cell wall fibers (PubMed:18952777,PubMed:22133261). Involved in the regulation of cellulose and hemicellulose biosynthetic genes as well as of genes involved in lignin polymerization and signaling (PubMed:22133261). Is not a direct target of SND1 (PubMed:18952777). {ECO:0000269\|PubMed:18952777, ECO:0000269\|PubMed:22133261}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681932	1e-159	LN681932.1 Cucumis melo genomic scaffold, anchoredscaffold00001.
GenBank	LN713266	1e-159	LN713266.1 Cucumis melo genomic chromosome, chr_12.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011653355.1	0.0	PREDICTED: NAC domain-containing protein 8-like
Swissprot	O49459	1e-101	NAC73_ARATH; NAC domain-containing protein 73
TrEMBL	A0A0A0LV71	0.0	A0A0A0LV71_CUCSA; Uncharacterized protein
STRING	XP_004148793.1	1e-180	(Cucumis sativus)
STRING	XP_004167470.1	1e-180	(Cucumis sativus)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1228	34	108

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G28500.1	1e-101	NAC domain containing protein 73

Publications ? help Back to Top
Srinivasasainagendra V,Page GP,Mehta T,Coulibaly I,Loraine AE CressExpress: a tool for large-scale mining of expression data from Arabidopsis. Plant Physiol., 2008. 147(3): p. 1004-16 [PMID:18467456] Sakamoto S,Mitsuda N Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant. Plant Cell Physiol., 2015. 56(2): p. 299-310 [PMID:25535195] Jervis J, et al. A metabolomic assessment of NAC154 transcription factor overexpression in field grown poplar stem wood. Phytochemistry, 2015. 115: p. 112-20 [PMID:25771508]