PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla019567
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family TCP
Protein Properties Length: 473aa    MW: 51428.6 Da    PI: 7.4337
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla019567genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP115.95.2e-36932522134
        TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.......................ssssasec.eaes 77 
                 g+kdrhsk+ T++g+RdRRvRls+ +a++f+dLqd+LGf ++sk++eWL+++a  ai el+++                       +++s+ e+  +++
  Cla019567  93 SGGKDRHSKVWTSKGLRDRRVRLSVATAIQFYDLQDRLGFEQPSKAVEWLIEAASDAIAELPSLngsfpetprqlsdekmgsdgtdqGFDSP-EMeLDGD 191
                689*************************************************************9988888888777777777555533333.2233333 PP

        TCP  78 ssssasnsssgkaaksaakskksqksaasalnlak....esrakarararertrekmrikn 134
                 ++ ++n++++ + + +a+s+ s++s+ s l+l++      rakar rarert++++  ++
  Cla019567 192 PKKHQQNQRQQLSLARSACSSTSETSKGSGLSLSRseilVNRAKARDRARERTAKEKEREQ 252
                333333333334444444555555555555555553344778*********8776655443 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036342.6E-4194249IPR005333Transcription factor, TCP
PROSITE profilePS5136930.38595153IPR017887Transcription factor TCP subgroup
PROSITE profilePS513709.148230248IPR017888CYC/TB1, R domain
Sequence ? help Back to Top
Protein Sequence    Length: 473 aa     Download sequence    Send to blast
MEVVDIQEQA CRFPRIGNGR NDSNKLGQKG ISQYSPEDEE DKEFSKRVAV VASATVNPAG  60
RVEPGGIGGG GLGANRLRGW HHSSRIIRVA RASGGKDRHS KVWTSKGLRD RRVRLSVATA  120
IQFYDLQDRL GFEQPSKAVE WLIEAASDAI AELPSLNGSF PETPRQLSDE KMGSDGTDQG  180
FDSPEMELDG DPKKHQQNQR QQLSLARSAC SSTSETSKGS GLSLSRSEIL VNRAKARDRA  240
RERTAKEKER EQESRDAHCI PNNPSFTELL TGGINNNGSN NTTNRTNSAS QNNVVEPNLF  300
EKATAMDYLA SSGIIGQQPS SSSSSRPGHN QSAGFSGQIL LGNPHQLPMS IPQFNVSAAE  360
NTQHDRFQHF SLVPDNLNDY NLNFTISAGL AAGCNRGTLQ SNISPSLLPY FQRFPHLDGS  420
NVPFFIGAAS PTTPAPVQLE SHHQLTPALF DGSWQLCYAD GSHHSDQKGK GKN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A7e-22100154155Putative transcription factor PCF6
5zkt_B7e-22100154155Putative transcription factor PCF6
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6819320.0LN681932.1 Cucumis melo genomic scaffold, anchoredscaffold00001.
GenBankLN7132660.0LN713266.1 Cucumis melo genomic chromosome, chr_12.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008444530.10.0PREDICTED: transcription factor TCP2-like
RefseqXP_016899575.10.0PREDICTED: transcription factor TCP2-like
TrEMBLA0A1S4DV390.0A0A1S4DV39_CUCME; transcription factor TCP2-like
STRINGXP_008444530.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40193156
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18390.23e-45TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 2