PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla019503
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family LSD
Protein Properties Length: 130aa    MW: 14058.2 Da    PI: 6.2128
Description LSD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla019503genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-LSD1246.3e-084165125
    zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
               Cg Cr lL Y  GA+ V+C++C tV
  Cla019503 41 CGTCRRLLKYLKGARCVQCSCCSTV 65
               ***********************99 PP

2zf-LSD1421.5e-1379103125
    zf-LSD1   1 CggCrtlLsYPrGApsVRCalCdtV 25 
                Cg+C +lL+YP+GA+sVRC++C  V
  Cla019503  79 CGSCAVLLMYPYGASSVRCSSCTSV 103
                **********************987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
TIGRFAMsTIGR010532.3E-123868IPR005735Zinc finger, LSD1-type
PfamPF069438.3E-74165IPR005735Zinc finger, LSD1-type
TIGRFAMsTIGR010533.3E-1276105IPR005735Zinc finger, LSD1-type
PfamPF069436.1E-1179103IPR005735Zinc finger, LSD1-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009617Biological Processresponse to bacterium
Sequence ? help Back to Top
Protein Sequence    Length: 130 aa     Download sequence    Send to blast
MDVHEIDKDE DDGPPPGWEP ITPPLPLPPP PLSSDMAQMV CGTCRRLLKY LKGARCVQCS  60
CCSTVNFVLE AHEVGQVKCG SCAVLLMYPY GASSVRCSSC TSVTEIGVHN RRPPWSVQQG  120
QGAPPTNFVQ
Functional Description ? help Back to Top
Source Description
UniProtPutative zinc finger that may be involved in programmed cell death and defense response. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011653178.14e-77PREDICTED: protein LOL2 isoform X1
SwissprotO654261e-41LOL2_ARATH; Protein LOL2
TrEMBLA0A0A0LXE31e-75A0A0A0LXE3_CUCSA; Uncharacterized protein
STRINGXP_004163439.12e-76(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF130263132
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G21610.14e-32lsd one like 2