PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla019324
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family ERF
Protein Properties Length: 721aa    MW: 81063.5 Da    PI: 8.3719
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla019324genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.77.7e-20629678255
        AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                +y+GVr+++ +g+W+AeIrdp+    + +r++lg+f+tae Aa a+++a+++++g
  Cla019324 629 HYRGVRQRP-WGKWAAEIRDPK----KaARVWLGTFDTAEAAALAYDEAALRFKG 678
                7********.**********94....45***********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003200.7231274IPR001680WD40 repeat
PROSITE profilePS500829.305241283IPR001680WD40 repeat
PROSITE profilePS5029410.575241526IPR017986WD40-repeat-containing domain
Gene3DG3DSA:2.130.10.105.9E-29242538IPR015943WD40/YVTN repeat-like-containing domain
SuperFamilySSF509785.95E-31242540IPR017986WD40-repeat-containing domain
SMARTSM0032084337377IPR001680WD40 repeat
SMARTSM0032014386424IPR001680WD40 repeat
SMARTSM0032015472517IPR001680WD40 repeat
PfamPF004000.13494517IPR001680WD40 repeat
Gene3DG3DSA:3.30.730.104.4E-32628687IPR001471AP2/ERF domain
PfamPF008471.3E-13629678IPR001471AP2/ERF domain
SuperFamilySSF541711.77E-21629687IPR016177DNA-binding domain
SMARTSM003801.3E-37629692IPR001471AP2/ERF domain
PROSITE profilePS5103225.014629686IPR001471AP2/ERF domain
CDDcd000181.77E-20629687No hitNo description
PRINTSPR003677.3E-11630641IPR001471AP2/ERF domain
PRINTSPR003677.3E-11652668IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 721 aa     Download sequence    Send to blast
MTQPVKKPKV EELCYAQSPE TVTAELDECN STADDQEAAL IALVEHRTRE VHHLQQRISY  60
YSRQLEEAEK RLQESESLLA RFRGPCYTLS SRSSQDCEFK CVEAEPRSAS PIHANGGSEA  120
KRLLGSSHSP SIPNRSNLAT TGEQGKPCMV SSMGKVVDDQ SDRKRRKFGN ASTFCSSAMF  180
FHATSLVSDD VLYYNSGPPM FALMMFALCM SEQKDHKELI PLVRSSSSPL TAQRDASYYF  240
SSQHKRKLRS LAPSPVNDQL FVTSALDGMI NLWQVESKGS FASLLCTTDC MSQKQRRWPE  300
DMAWHPAGNS LFAVYSADGG DSQISILNFN RTKEKASVTF LEDKPHVKGI INGISFLPWE  360
SVPFITGGSD HAVVLWTMKD RQNTWKPELL HRNLHSSAVM GVSGMQMKQI VLSAGADKRI  420
LAFDVQVGSV LFKHQLESKC MSVLPNPRDF NLFMVQTGSP EKQLRLFDIR LEQKEVHSFG  480
WKQESSESQS ALINQAWSPN GLHLTSGSSD PVIHVFDIRY NSHMPSQSIK AHQKRVFKAV  540
QRVVKIKKVD SKRGKRPLCS DESEEENPLP IYSARSEHDM SAMVCALGEV IRSGSSKSPA  600
VVEADYWPES ESQSQRADHE EEVKRESRHY RGVRQRPWGK WAAEIRDPKK AARVWLGTFD  660
TAEAAALAYD EAALRFKGTK AKLNFPERLT TPPSYAYHHP TFMLNLHSST SHPSHHQDHK  720
N
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-25626691268ATERF1
3gcc_A3e-25626691268ATERF1
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818141e-158LN681814.1 Cucumis melo genomic scaffold, anchoredscaffold00089.
GenBankLN7132561e-158LN713256.1 Cucumis melo genomic chromosome, chr_2.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008464363.10.0PREDICTED: uncharacterized protein LOC103502273 isoform X1
TrEMBLE5GBL50.0E5GBL5_CUCME; Nucleotide binding protein
STRINGXP_004167197.10.0(Cucumis sativus)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61890.13e-37ERF family protein