PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cla019286 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
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Family | SBP | ||||||||
Protein Properties | Length: 379aa MW: 42162.9 Da PI: 7.4683 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 131.4 | 3.2e-41 | 91 | 167 | 2 | 78 |
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 C v+gC +dls+ ++yhrrhkvCe hsk+p+v + gl+qrfCqqCsrfh+l+efDe+krsCr+rL++hn+rrrk+q+ Cla019286 91 CLVDGCVSDLSNYRDYHRRHKVCELHSKTPQVSIGGLKQRFCQQCSRFHSLDEFDEGKRSCRKRLDGHNRRRRKPQS 167 **************************************************************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 7.3E-34 | 83 | 152 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 31.59 | 88 | 165 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 1.7E-38 | 89 | 170 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 4.6E-31 | 91 | 164 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0048653 | Biological Process | anther development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 379 aa Download sequence Send to blast |
MDWNLKTPSW DFTQLEQDAL KNINTIGASS SFVEHRTTSG NFSVDLKLGQ VSNMGTKYVV 60 NEPGVFKVAP SPSEPSKRAR GSGNGAQPLS CLVDGCVSDL SNYRDYHRRH KVCELHSKTP 120 QVSIGGLKQR FCQQCSRFHS LDEFDEGKRS CRKRLDGHNR RRRKPQSDSL SRSILSHYQG 180 SQLLPFSTSH VYPSTIVMNH SWCDIANNTE VDARLHVQQE PTHFPDKHNI YLGSSSNDNI 240 HKIGKQVTLM QGDNPESSVI RPPIKTIDFS ENEGGRSKML YDRFTTPGHE SSCALSLLSS 300 LQTQSPGIGF SEAEQDRHLI SFLQPLDVSL GHHNNLEPVN SVLNGSVSNA DINCSGMFHI 360 ASNDVGNEAP PPSLPFHWQ |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 6e-29 | 91 | 164 | 11 | 84 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 147 | 164 | KRSCRKRLDGHNRRRRKP |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00555 | DAP | Transfer from AT5G50570 | Download |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681814 | 0.0 | LN681814.1 Cucumis melo genomic scaffold, anchoredscaffold00089. | |||
GenBank | LN713256 | 0.0 | LN713256.1 Cucumis melo genomic chromosome, chr_2. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004138255.1 | 0.0 | PREDICTED: squamosa promoter-binding-like protein 13A | ||||
TrEMBL | A0A0A0LNV8 | 0.0 | A0A0A0LNV8_CUCSA; Uncharacterized protein | ||||
STRING | XP_004167278.1 | 0.0 | (Cucumis sativus) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2591 | 33 | 78 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G50670.1 | 1e-59 | SBP family protein |