PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cla019279 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
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Family | NF-YC | ||||||||
Protein Properties | Length: 220aa MW: 24292.4 Da PI: 5.0209 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 178.1 | 8.3e-56 | 34 | 138 | 1 | 102 |
NF-YC 1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivp 97 ql++fw+ q ie+++dfknh+lPlarikki+kadedv+misaeaP+l++kacelfilelt+rswlhaeenkrrtl+k+diaaa+trtdifdflvdivp Cla019279 34 QLQMFWSFQrqeIEQVNDFKNHQLPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDIAAAITRTDIFDFLVDIVP 133 89****9887789*************************************************************************************** PP NF-YC 98 rdelk 102 rde+k Cla019279 134 RDEIK 138 **975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47113 | 1.09E-33 | 30 | 128 | IPR009072 | Histone-fold |
Pfam | PF00808 | 1.4E-20 | 56 | 119 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene3D | G3DSA:1.10.20.10 | 6.1E-37 | 57 | 134 | IPR009072 | Histone-fold |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 220 aa Download sequence Send to blast |
MDTNNQAQSS PYPPPQAPVP APPFHHLLQQ QQQQLQMFWS FQRQEIEQVN DFKNHQLPLA 60 RIKKIMKADE DVRMISAEAP ILFAKACELF ILELTIRSWL HAEENKRRTL QKNDIAAAIT 120 RTDIFDFLVD IVPRDEIKDE AGLGGMVGAT ASGVPYYYPP MGQPAGAPGG MMIGRPAMDP 180 TGVYAQPPSQ AWQSVWQTAA EDGSYASGGS SGQGNLDGQR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5g49_B | 8e-55 | 42 | 134 | 3 | 95 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 106 | 112 | RRTLQKN |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681814 | 0.0 | LN681814.1 Cucumis melo genomic scaffold, anchoredscaffold00089. | |||
GenBank | LN713256 | 0.0 | LN713256.1 Cucumis melo genomic chromosome, chr_2. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008464428.1 | 1e-162 | PREDICTED: nuclear transcription factor Y subunit C-1 | ||||
Swissprot | Q9SMP0 | 1e-109 | NFYC1_ARATH; Nuclear transcription factor Y subunit C-1 | ||||
TrEMBL | A0A1S3CLW7 | 1e-160 | A0A1S3CLW7_CUCME; nuclear transcription factor Y subunit C-1 | ||||
STRING | XP_008464428.1 | 1e-161 | (Cucumis melo) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF11071 | 30 | 38 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G48590.1 | 3e-88 | nuclear factor Y, subunit C1 |
Publications ? help Back to Top | |||
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