PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla019248
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family GRAS
Protein Properties Length: 511aa    MW: 56679.2 Da    PI: 6.1307
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla019248genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS337.42.5e-1031395101374
       GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykal.ppsetsekn...sseelaalklfsevsPilkfshl 96 
                l +lL++cAeav+ +d + a+ lL++l+ +a   g+++qR+a++f+++L  rla  ++  y  +  p  ++ ++    +++  al+l +e+ P ++f+h+
  Cla019248 139 LLHLLVACAEAVACRDRSHASILLSELRANALVFGSSFQRVASCFVQGLTDRLALVQPLGYVGFgLPIMSRVDHssdRKKKDEALNLAYEIYPHIQFGHF 238
                579***************************************************97776666554333333333112555556667799*********** PP

       GRAS  97 taNqaIleavegeervHiiDfdis....qGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledlele 192
                +aN+ Ile +ege+ vH++D+++     +G QW +L+++La+ p+    lR+Tg+g     s ++++ +ge+L+++Ae +gv++e  + v+ +le+l+++
  Cla019248 239 VANSSILEVFEGENSVHVLDLGMAfglpYGHQWRSLIESLAESPNR-RLLRVTGIGL----SVNRYRVMGEKLKSYAEGVGVQVEVLA-VEGNLENLRPQ 332
                ********************87762222678***********8765.89********....9***********************999.799******** PP

       GRAS 193 eLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgr 292
                +++++ gEal++ +++q+h +++es        +vL+++ +lsPk +v+veq+++hn++ Fl rf+eal+yysa+fdsl+a lp+ +  r+k+E++++++
  Cla019248 333 DIKLHDGEALVITSIFQMHCVVKESRGALT---SVLRMIYDLSPKALVLVEQDSNHNGPFFLGRFMEALHYYSAIFDSLDAMLPKYDTRRAKIEQFYFAE 429
                *********************977665555...8****************************************************************** PP

       GRAS 293 eivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                ei+n+v+ceg +r+erhe++ +Wr+r+++aGF++ p++  +++qak  + k+k ++gy++ ee+g+lvlgWk++p+v++S+W+
  Cla019248 430 EIKNIVSCEGMARVERHERVDQWRRRMSRAGFQASPIK--VMAQAKQWIGKFKaNEGYTIVEEKGCLVLGWKSKPIVATSCWK 510
                ************************************95..899***************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098553.611113491IPR005202Transcription factor GRAS
PfamPF035148.5E-101139510IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 511 aa     Download sequence    Send to blast
MALDGDGGSF FSTDFTSVGK EDEDAVGDGG AAHWVSLLDD TAAASRWVIS FSDEFRHKRL  60
KIEPESIPTE DGSGNSSNNR SSLSRSSSSD SLSTGFRAHI WTYNQRYLAA EAVEEAAAAI  120
INAEESAAEE DASADGMRLL HLLVACAEAV ACRDRSHASI LLSELRANAL VFGSSFQRVA  180
SCFVQGLTDR LALVQPLGYV GFGLPIMSRV DHSSDRKKKD EALNLAYEIY PHIQFGHFVA  240
NSSILEVFEG ENSVHVLDLG MAFGLPYGHQ WRSLIESLAE SPNRRLLRVT GIGLSVNRYR  300
VMGEKLKSYA EGVGVQVEVL AVEGNLENLR PQDIKLHDGE ALVITSIFQM HCVVKESRGA  360
LTSVLRMIYD LSPKALVLVE QDSNHNGPFF LGRFMEALHY YSAIFDSLDA MLPKYDTRRA  420
KIEQFYFAEE IKNIVSCEGM ARVERHERVD QWRRRMSRAG FQASPIKVMA QAKQWIGKFK  480
ANEGYTIVEE KGCLVLGWKS KPIVATSCWK C
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A6e-5314650926378Protein SCARECROW
5b3h_A5e-5314650925377Protein SCARECROW
5b3h_D5e-5314650925377Protein SCARECROW
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818140.0LN681814.1 Cucumis melo genomic scaffold, anchoredscaffold00089.
GenBankLN7132560.0LN713256.1 Cucumis melo genomic chromosome, chr_2.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004138071.10.0PREDICTED: DELLA protein GAI-like
TrEMBLA0A1S3CLP80.0A0A1S3CLP8_CUCME; DELLA protein GAI-like
STRINGXP_004138071.10.0(Cucumis sativus)
STRINGXP_004161347.10.0(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF87302945
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66350.13e-73RGA-like 1