PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cla019107

Organism

Citrullus lanatus

Taxonomic ID

3654

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus

Family

Dof

Protein Properties

Length: 464aa MW: 50620.7 Da PI: 6.1887

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cla019107	genome	ICuGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	126.1	1.1e-39	115	175	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++k+l+cprC+s++tkfCyynny+++qPr+fCkaC+ryWt+GG++rnvPvG+grrknk+s Cla019107 115 PDKILPCPRCNSMETKFCYYNNYNVNQPRHFCKACQRYWTEGGTMRNVPVGAGRRKNKNSA 175 7899******************************************************976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	1.0E-31	111	172	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	2.8E-32	117	173	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.733	119	173	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	121	157	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 464 aa Download sequence Send to blast
MLEIKDPAIK IFGKEIQLPA DCEVSLIESD DSVSTSDKES GDGALQKDVG KATESLAAKD 60 GTLHDSEDSA CVQTANEAHM NPEVVSMDEN DKFATSKPEK EQNDAPNSKE KLKKPDKILP 120 CPRCNSMETK FCYYNNYNVN QPRHFCKACQ RYWTEGGTMR NVPVGAGRRK NKNSASHYRQ 180 ITISEALQAA QIDIPNGVNC LATKSNGRVL NFSVNAPVCE SMSTVLNPAG RKVLNGTRNE 240 FHRLDDQGIK APCKGGETGD DCSSASSVTM SSSMEEGARR CPQEPQMQNI NGFPPQIPYL 300 PGVPWPCSWN PPMPPPAFCP PGVPLSFYPA TYWSCGVPGA WNIPWFPPQP CSPNSGANSP 360 TLGKHSRDGD KLQADNSENE EPPKQKNGSV LIPKTLRIDD PDEAAKSSIW ETLGIKNDSI 420 KAVDLSKVFQ SKGDQKNRVS EVLSPVLQAN PAALSRSLTF HERS

Sequence ? help Back to Top

Protein Sequence Length: 464 aa Download sequence Send to blast

MLEIKDPAIK IFGKEIQLPA DCEVSLIESD DSVSTSDKES GDGALQKDVG KATESLAAKD  60
GTLHDSEDSA CVQTANEAHM NPEVVSMDEN DKFATSKPEK EQNDAPNSKE KLKKPDKILP  120
CPRCNSMETK FCYYNNYNVN QPRHFCKACQ RYWTEGGTMR NVPVGAGRRK NKNSASHYRQ  180
ITISEALQAA QIDIPNGVNC LATKSNGRVL NFSVNAPVCE SMSTVLNPAG RKVLNGTRNE  240
FHRLDDQGIK APCKGGETGD DCSSASSVTM SSSMEEGARR CPQEPQMQNI NGFPPQIPYL  300
PGVPWPCSWN PPMPPPAFCP PGVPLSFYPA TYWSCGVPGA WNIPWFPPQP CSPNSGANSP  360
TLGKHSRDGD KLQADNSENE EPPKQKNGSV LIPKTLRIDD PDEAAKSSIW ETLGIKNDSI  420
KAVDLSKVFQ SKGDQKNRVS EVLSPVLQAN PAALSRSLTF HERS

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence (By similarity). Regulates a photoperiodic flowering response. Transcriptional repressor of 'CONSTANS' expression. {ECO:0000250, ECO:0000269\|PubMed:19619493}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00394	DAP	Transfer from AT3G47500	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Circadian-regulation. Highly expressed at the beginning of the light period, then decreases, reaching a minimum between 16 and 29 hours after dawn before rising again at the end of the day. {ECO:0000269\|PubMed:19619493}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681813	0.0	LN681813.1 Cucumis melo genomic scaffold, anchoredscaffold00030.
GenBank	LN713256	0.0	LN713256.1 Cucumis melo genomic chromosome, chr_2.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004138169.2	0.0	PREDICTED: cyclic dof factor 3
Swissprot	Q8LFV3	1e-112	CDF3_ARATH; Cyclic dof factor 3
TrEMBL	A0A0A0LP47	0.0	A0A0A0LP47_CUCSA; AOBP (Ascorbate oxidase promoter-binding protein)
STRING	XP_004154970.1	0.0	(Cucumis sativus)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF625	34	147

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G47500.1	1e-101	cycling DOF factor 3

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Corrales AR, et al. Multifaceted role of cycling DOF factor 3 (CDF3) in the regulation of flowering time and abiotic stress responses in Arabidopsis. Plant Cell Environ., 2017. 40(5): p. 748-764 [PMID:28044345] Renau-Morata B, et al. Ectopic Expression of CDF3 Genes in Tomato Enhances Biomass Production and Yield under Salinity Stress Conditions. Front Plant Sci, 2017. 8: p. 660 [PMID:28515731] Henriques R, et al. The antiphasic regulatory module comprising CDF5 and its antisense RNA FLORE links the circadian clock to photoperiodic flowering. New Phytol., 2017. 216(3): p. 854-867 [PMID:28758689]