PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla019050
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family TCP
Protein Properties Length: 361aa    MW: 39578.9 Da    PI: 8.5739
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla019050genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP82.79.6e-2651130366
        TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt................s 66 
                g+kdrhsk++T +g+RdRR+Rls+++a++++dLqd+L + ++sk i+WLl   k  i+ l+ +                +
  Cla019050  51 GGKDRHSKVCTIRGLRDRRIRLSVPTAIQLYDLQDKLRLGQPSKVIDWLLDVTKVDIDNLPPLqipagfspfhqqmlfpQ 130
                79*************************************************************44433333333333330 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036342.9E-2452179IPR005333Transcription factor, TCP
PROSITE profilePS5136926.60652110IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009965Biological Processleaf morphogenesis
GO:0030154Biological Processcell differentiation
GO:0045962Biological Processpositive regulation of development, heterochronic
Sequence ? help Back to Top
Protein Sequence    Length: 361 aa     Download sequence    Send to blast
MLKEKGCEAK DEGIRSSNND GKYSFPKAPT SSRQWSGFRN PRIVRVSRSF GGKDRHSKVC  60
TIRGLRDRRI RLSVPTAIQL YDLQDKLRLG QPSKVIDWLL DVTKVDIDNL PPLQIPAGFS  120
PFHQQMLFPQ YDPHHYYTSS STSSRFCNSL PPPPPFALDV KGSDAYQTTT MTVEKTKLWD  180
VDLALQEKAA STTAKGKWID GSNNNSEQVD DYNEQISSQK LLSMAICSSN LSNMINNSTP  240
YNNYNSSSSD HNGVFPSQLV EAAQTTTSSS SNSSLFFTPY ASYITNPFES HIHFLSSNSH  300
ANLSNPFMPS SLHPFASQNL KPFPAPSFNL KQLLHAADHS NAGGGGVGAG SSTKDGAAGD  360
S
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A6e-1657111155Putative transcription factor PCF6
5zkt_B6e-1657111155Putative transcription factor PCF6
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00065PBMTransfer from AT5G60970Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818131e-166LN681813.1 Cucumis melo genomic scaffold, anchoredscaffold00030.
GenBankLN7132561e-166LN713256.1 Cucumis melo genomic chromosome, chr_2.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011648477.11e-177PREDICTED: transcription factor TCP5-like
TrEMBLA0A0A0LRU61e-175A0A0A0LRU6_CUCSA; Uncharacterized protein
STRINGXP_008453284.11e-172(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF93234119
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60970.14e-46TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 5