PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla019034
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family Dof
Protein Properties Length: 324aa    MW: 34955.5 Da    PI: 8.0801
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla019034genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof1245e-393394263
     zf-Dof  2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkksss 63
               +++alkcprCds ntkfCyynny+lsqPr+fCk+CrryWtkGG lrnvPvGgg+rk k+sss
  Cla019034 33 NHQALKCPRCDSLNTKFCYYNNYNLSQPRHFCKSCRRYWTKGGVLRNVPVGGGCRKTKRSSS 94
               57899*****************************************************9875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074781.0E-253386IPR003851Zinc finger, Dof-type
PfamPF027012.9E-333591IPR003851Zinc finger, Dof-type
PROSITE profilePS5088429.6183791IPR003851Zinc finger, Dof-type
PROSITE patternPS0136103975IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 324 aa     Download sequence    Send to blast
MQDIHSIAGG SRLFGGGGGG DRRLRPHLHH HQNHQALKCP RCDSLNTKFC YYNNYNLSQP  60
RHFCKSCRRY WTKGGVLRNV PVGGGCRKTK RSSSSKSKVN SDAAATPPPP PSLRERKSTS  120
HSSSESSSLT ATTTTAAAAA AAATEAVSAP SSNSASTLLN VQDTKLFPGS TTNTNPNFEG  180
TAAAAISDCG IFSEIGSFTS LITSSNETLA FGFGNMTDVT AFTMNNHQAL ANQWPLPQRM  240
MNVNDELKMQ EITDGGGGGY MDQTAQVYPS GLQNNRSNNI GFGPLDWQSN GDHQVLFDLP  300
NAVDQAYWSQ NQWSDQDQPN LYLP
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00570DAPTransfer from AT5G60850Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818131e-107LN681813.1 Cucumis melo genomic scaffold, anchoredscaffold00030.
GenBankLN7132561e-107LN713256.1 Cucumis melo genomic chromosome, chr_2.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022970312.11e-151dof zinc finger protein DOF5.4-like
TrEMBLA0A0A0LSJ31e-135A0A0A0LSJ3_CUCSA; Uncharacterized protein
STRINGXP_008453317.11e-129(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF59983050
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60850.16e-55OBF binding protein 4