PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cla019007 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
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Family | ERF | ||||||||
Protein Properties | Length: 203aa MW: 22741.2 Da PI: 9.9406 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 46.9 | 6.7e-15 | 33 | 81 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 + GVr+++ +grWvAeI++ s ++ r +lg+f ae+Aa a+++a++ l+g Cla019007 33 FLGVRQRP-SGRWVAEIKVSS---QKLRLWLGTFNRAEDAAMAYDRAARLLRG 81 67******.7*********42...36***********************9998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 18.597 | 32 | 89 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.8E-26 | 32 | 89 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 5.5E-32 | 32 | 95 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 3.10E-27 | 32 | 88 | No hit | No description |
SuperFamily | SSF54171 | 1.5E-18 | 33 | 90 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 1.8E-6 | 33 | 44 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 9.6E-9 | 35 | 81 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.8E-6 | 55 | 71 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 203 aa Download sequence Send to blast |
MAATQSSNPS SQSPNPLNSN TNNQEANHGR RRFLGVRQRP SGRWVAEIKV SSQKLRLWLG 60 TFNRAEDAAM AYDRAARLLR GRSAKTNFSY DHHDHGFLKS SSINEEQALG HSPKLCRLLQ 120 HAIMKNRSRL RSTADYEYHQ QQISRNNELI DSVVEDTIFC SSTNLVENNN INNKGCGCGF 180 SFGGSKVYTS VFVAPSFSSD VEK |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681813 | 1e-108 | LN681813.1 Cucumis melo genomic scaffold, anchoredscaffold00030. | |||
GenBank | LN713256 | 1e-108 | LN713256.1 Cucumis melo genomic chromosome, chr_2. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016901366.1 | 7e-92 | PREDICTED: ethylene-responsive transcription factor ERF087-like isoform X1 | ||||
TrEMBL | A0A1S4DZE7 | 2e-90 | A0A1S4DZE7_CUCME; ethylene-responsive transcription factor ERF087-like isoform X1 | ||||
STRING | XP_004155038.1 | 6e-89 | (Cucumis sativus) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF12349 | 27 | 34 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G19790.1 | 6e-14 | related to AP2 11 |