PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cla018977 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
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Family | CO-like | ||||||||
Protein Properties | Length: 354aa MW: 41339.5 Da PI: 4.8697 | ||||||||
Description | CO-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 26.2 | 1.6e-08 | 6 | 48 | 3 | 39 |
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39 +r+C+ + k++++fC ++ +lC++C ++ H+ H++ Cla018977 6 ARVCDSCLCKRARWFCAADDAFLCQTCDVSVHSAnqlarrHDR 48 689*****************************65677777776 PP | |||||||
2 | CCT | 68.2 | 2.2e-23 | 306 | 349 | 1 | 44 |
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 Rea+++RY+eKr+tR+F+KkirY++RK +Ae+RpR+KGrFvk++ Cla018977 306 REARVSRYREKRRTRLFSKKIRYQVRKLNAEKRPRMKGRFVKRT 349 9*****************************************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50119 | 11.007 | 4 | 51 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 8.8E-10 | 4 | 51 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 5.9E-8 | 6 | 49 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 3.10E-8 | 7 | 39 | No hit | No description |
Pfam | PF06203 | 6.0E-18 | 306 | 348 | IPR010402 | CCT domain |
PROSITE profile | PS51017 | 16.043 | 306 | 348 | IPR010402 | CCT domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 354 aa Download sequence Send to blast |
MGGRTARVCD SCLCKRARWF CAADDAFLCQ TCDVSVHSAN QLARRHDRIR LETASFNSTN 60 NQSQSNLPPW LNGFTRKART PRPKISSTKA SVFSLVPEIG NDNEGFSVDE NDDEQHQFLN 120 HHQQEVPVFD PLFDDQKFLL THELEDFGDG FLPSEVDLAE FVADVENLLG RQEEEQEQEQ 180 ENDENTVIFK VKSEDQLVQD CINNNNNNGF LMDWNFKGEE IEEDEMNKVE EELKINNNNK 240 KNISLRLNYD AVITAWDDQS SPYTTGNRPE FDLDDCWEEW SGWGFLEESN GGKWGGREEW 300 KNNGEREARV SRYREKRRTR LFSKKIRYQV RKLNAEKRPR MKGRFVKRTT THNH |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 316 | 332 | RRTRLFSKKIRYQVRKL |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008453390.1 | 1e-173 | PREDICTED: zinc finger protein CONSTANS-LIKE 16 | ||||
TrEMBL | A0A1S3BWX5 | 1e-172 | A0A1S3BWX5_CUCME; zinc finger protein CONSTANS-LIKE 16 | ||||
STRING | XP_008453390.1 | 1e-172 | (Cucumis melo) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1473 | 33 | 92 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G73870.1 | 5e-62 | B-box type zinc finger protein with CCT domain |