PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cla018973

Organism

Citrullus lanatus

Taxonomic ID

3654

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus

Family

NAC

Protein Properties

Length: 345aa MW: 39380.6 Da PI: 7.6916

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cla018973	genome	ICuGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	173.6	5.7e-54	5	131	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelv 100 lppGfrFhPtdeel+++yL++k+++++++ ++i vd++k ePwdLp+k++ +ekewyfFs rd+ky+tg r+nrat++gyWk+tgkdke++ +++ lv Cla018973 5 LPPGFRFHPTDEELISYYLTQKLSDSSFTS-KAIGVVDLNKNEPWDLPAKATMGEKEWYFFSLRDRKYPTGLRTNRATEAGYWKTTGKDKEIFGTGHVLV 103 79***********************999.88***********999999************************************9* PP NAM 101 glkktLvfykgrapkgektdWvmheyrl 128 g+kktLvfykgrap+gek++Wvmheyr Cla018973 104 GMKKTLVFYKGRAPRGEKSNWVMHEYRQ 131 ************************95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.07E-60	3	152	IPR003441	NAC domain
PROSITE profile	PS51005	58.306	5	152	IPR003441	NAC domain
Pfam	PF02365	2.9E-28	6	130	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 345 aa Download sequence Send to blast
MEENLPPGFR FHPTDEELIS YYLTQKLSDS SFTSKAIGVV DLNKNEPWDL PAKATMGEKE 60 WYFFSLRDRK YPTGLRTNRA TEAGYWKTTG KDKEIFGTGH VLVGMKKTLV FYKGRAPRGE 120 KSNWVMHEYR QQTNHFFKPS KEEWVVCRVF QKQNTPKKPQ QSSSSQPSLS SPCDTNSIVN 180 EFGDIELSNF NNSNNTSSSG NFNNIISSQT YENSNMINNN MMNMNMNLNL NNWATPTNYD 240 QTLPSLSWPL NSNNLLSSSN LSMNSLLLKA LQLRTFQQQR DNVLASSSST TFNNINHDQP 300 NIIHSQFGTT NDHLSFQASS SSKVFESSSQ QQQQQEQPLN LDSLW

Sequence ? help Back to Top

Protein Sequence Length: 345 aa Download sequence Send to blast

MEENLPPGFR FHPTDEELIS YYLTQKLSDS SFTSKAIGVV DLNKNEPWDL PAKATMGEKE  60
WYFFSLRDRK YPTGLRTNRA TEAGYWKTTG KDKEIFGTGH VLVGMKKTLV FYKGRAPRGE  120
KSNWVMHEYR QQTNHFFKPS KEEWVVCRVF QKQNTPKKPQ QSSSSQPSLS SPCDTNSIVN  180
EFGDIELSNF NNSNNTSSSG NFNNIISSQT YENSNMINNN MMNMNMNLNL NNWATPTNYD  240
QTLPSLSWPL NSNNLLSSSN LSMNSLLLKA LQLRTFQQQR DNVLASSSST TFNNINHDQP  300
NIIHSQFGTT NDHLSFQASS SSKVFESSSQ QQQQQEQPLN LDSLW

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	4e-54	4	158	16	171	NO APICAL MERISTEM PROTEIN
1ut4_B	4e-54	4	158	16	171	NO APICAL MERISTEM PROTEIN
1ut7_A	4e-54	4	158	16	171	NO APICAL MERISTEM PROTEIN
1ut7_B	4e-54	4	158	16	171	NO APICAL MERISTEM PROTEIN
3swm_A	4e-54	4	158	19	174	NAC domain-containing protein 19
3swm_B	4e-54	4	158	19	174	NAC domain-containing protein 19
3swm_C	4e-54	4	158	19	174	NAC domain-containing protein 19
3swm_D	4e-54	4	158	19	174	NAC domain-containing protein 19
3swp_A	4e-54	4	158	19	174	NAC domain-containing protein 19
3swp_B	4e-54	4	158	19	174	NAC domain-containing protein 19
3swp_C	4e-54	4	158	19	174	NAC domain-containing protein 19
3swp_D	4e-54	4	158	19	174	NAC domain-containing protein 19
4dul_A	4e-54	4	158	16	171	NAC domain-containing protein 19
4dul_B	4e-54	4	158	16	171	NAC domain-containing protein 19
Search in ModeBase

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00364	DAP	Transfer from AT3G18400	Download

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681813	1e-98	LN681813.1 Cucumis melo genomic scaffold, anchoredscaffold00030.
GenBank	LN713256	1e-98	LN713256.1 Cucumis melo genomic chromosome, chr_2.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008453395.1	1e-170	PREDICTED: NAC domain-containing protein 92
TrEMBL	A0A1S3BWY4	1e-169	A0A1S3BWY4_CUCME; NAC domain-containing protein 92
STRING	XP_008453395.1	1e-169	(Cucumis melo)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4946	33	56

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G18400.1	2e-91	NAC domain containing protein 58