PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla018967
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family MYB
Protein Properties Length: 269aa    MW: 30541.1 Da    PI: 8.2218
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla018967genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.98.7e-173279148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+W+ eEd ll++++  +G g+W++ a + g++Rt+k+c++rw++yl
        Cla018967 32 RGPWSVEEDSLLIHYISVHGEGRWNLLAVRSGLRRTGKSCRLRWLNYL 79
                     89********************************************97 PP
2Myb_DNA-binding49.41.1e-1585128146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg+ +++E++l++d++ ++G++ W++Ia+ ++ gRt++++k++w++
        Cla018967  85 RGNLSPQEQLLILDLHSRWGNR-WSKIAQQLP-GRTDNEIKNYWRT 128
                      7899******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129423.2282783IPR017930Myb domain
SuperFamilySSF466893.48E-2930126IPR009057Homeodomain-like
SMARTSM007171.3E-143181IPR001005SANT/Myb domain
PfamPF002495.1E-153279IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.4E-213386IPR009057Homeodomain-like
CDDcd001671.85E-103479No hitNo description
PROSITE profilePS5129419.00384134IPR017930Myb domain
SMARTSM007172.1E-1384132IPR001005SANT/Myb domain
PfamPF002492.3E-1485128IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.2E-2287133IPR009057Homeodomain-like
CDDcd001671.21E-989128No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 269 aa     Download sequence    Send to blast
MASHCKSKSQ SKSSSGSSFG VIKDNKISEI RRGPWSVEED SLLIHYISVH GEGRWNLLAV  60
RSGLRRTGKS CRLRWLNYLK PEVKRGNLSP QEQLLILDLH SRWGNRWSKI AQQLPGRTDN  120
EIKNYWRTRV QKQAKLLNIK TNSPEFKDII RRFWIPRLFN QINECSSSSP PPPCPTPQLS  180
DSDSLPAAGD GNRRHFDKEQ NSTSSESMDI SQVSDPFSDV PSWNHGGGET AAANFEYPIG  240
DSGMQLTDWI DDDDSFGGCL WNFDGLWQF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-24271342108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription repressor of phosphate (Pi) starvation-induced genes. Regulates negatively Pi starvation responses via the repression of gibberellic acid (GA) biosynthesis and signaling. Modulates root architecture, phosphatase activity, and Pi uptake and accumulation. {ECO:0000269|PubMed:19529828}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Slightly induced by salicylic acid (PubMed:16463103). Induced reversibly in response to phosphate (Pi) deficiency but repressed in the presence of Pi, specifically in the leaves. Availability of Pi increases with decreased levels (PubMed:19529828). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:19529828}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008453409.11e-151PREDICTED: transcription factor MYB24-like
SwissprotQ9C9G71e-72MYB62_ARATH; Transcription factor MYB62
TrEMBLA0A1S3BWZ61e-150A0A1S3BWZ6_CUCME; transcription factor MYB24-like
STRINGXP_008453409.11e-150(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF16393494
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25340.15e-73myb domain protein 116
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]