PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla018855
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family HB-PHD
Protein Properties Length: 715aa    MW: 81408.5 Da    PI: 9.2522
Description HB-PHD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla018855genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox33.95.3e-115075511054
                HHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
   Homeobox  10 eqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                + +e L ++F+ n  ps++ +e L+k+lgL+ ++V+ WF+N R+ 
  Cla018855 507 YAVEKLRQVFADNELPSRDVKENLSKELGLDAEKVSKWFKNARYS 551
                67899**************************************85 PP
2PHD35.81.9e-12239294151
                SBTTTSS..TCTTSSEEEBS.SSSSEEETTTSTSSSSHHSHHSS..TBSSHHHHTT CS
        PHD   1 rCkvCgk..sdeegelvlCd.gCkewfHlkClglkleseekpeg..ewlCeeCkek 51 
                +C+ C+   +  +++++lCd +C+ +fH+kCl+++l+++++p g   w+C+ C++k
  Cla018855 239 FCAKCKLreAFPDNDIILCDgTCNCAFHQKCLDPPLDTKNIPPGdqGWFCKFCECK 294
                699999854455********56********************9999*******985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF579031.82E-13230296IPR011011Zinc finger, FYVE/PHD-type
Gene3DG3DSA:3.30.40.104.3E-11235294IPR013083Zinc finger, RING/FYVE/PHD-type
PROSITE profilePS5001610.211237294IPR019787Zinc finger, PHD-finger
CDDcd155042.79E-31239291No hitNo description
PfamPF006281.3E-9239294IPR019787Zinc finger, PHD-finger
SMARTSM002491.0E-7239292IPR001965Zinc finger, PHD-type
PROSITE patternPS013590240291IPR019786Zinc finger, PHD-type, conserved site
Gene3DG3DSA:1.10.10.607.0E-12487549IPR009057Homeodomain-like
PROSITE profilePS5007112.163495555IPR001356Homeobox domain
SMARTSM003893.2E-9497559IPR001356Homeobox domain
SuperFamilySSF466892.87E-10498561IPR009057Homeodomain-like
CDDcd000865.23E-8503556No hitNo description
PfamPF000461.9E-8507551IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009733Biological Processresponse to auxin
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 715 aa     Download sequence    Send to blast
MRGVERRLIE KESGKCSHAK LETGSELIFP LKLKRCSKIS HSKQKKSRTK SHSQPICSTF  60
KRRPLPKSLS KGNKNVTIRQ LAGKKFRLKK LDTKSSKELL LSKLRGGKSL SSTNMKGDAE  120
NVEPVVKKNQ QRKRRKSKGK KEKVELDEAS RLQRRTRYLI IKMKAEQNLI DAYSGEGWKG  180
QSREKIRPEK ELQRAMKQIL KYKLGIRDAI RQLDLLGSVG CIEDSVIGPD GSVYHEHIFC  240
AKCKLREAFP DNDIILCDGT CNCAFHQKCL DPPLDTKNIP PGDQGWFCKF CECKMDILEG  300
MNAHLGTRFS LNISWEDVFK EEAAFPDGGN ALLNHEEDWP SDDSEDDDYD PDKKEKGYDN  360
ASGEENDKDV LEESSSSTSL SWSLDDEDLT ARDGIGCEDH FGAGSSMVSD GSNEEGITCG  420
RRQRQAVDYK KLYVEMFGKD APPHEQEVSE DEDWGPAKRR RREKECDAAS TLMSLCESEK  480
KSQDIDMEAE KKLHNSHSRS FFRIPRYAVE KLRQVFADNE LPSRDVKENL SKELGLDAEK  540
VSKWFKNARY SALRTRKAEG AAQPHSSHKT FNESRLADSK EMSANLLSLE DAPIKELQLK  600
LRGSHCKKKQ HRKSSLVSSN YDKDGFDFGD DISLKNLLKN RKTKVKKRVN FVARGGGQEA  660
EVEMERLCNI KGRLETMKQK LLRLSNKKDY GILDRSHMFE QPIVYVPVAV LKEKV
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14450KKSRTKS
2134141RKSKGKKE
3458463RRRREK
4639646NRKTKVKK
Functional Description ? help Back to Top
Source Description
UniProtSpecifically binds to the fungal elicitor-responsive DNA element, 5'-CTAATTGTTTA-3', of the gene PR2 promoter.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By pathogen infection.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818130.0LN681813.1 Cucumis melo genomic scaffold, anchoredscaffold00030.
GenBankLN7132560.0LN713256.1 Cucumis melo genomic chromosome, chr_2.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004146371.10.0PREDICTED: pathogenesis-related homeodomain protein
SwissprotP487851e-159PRH_ARATH; Pathogenesis-related homeodomain protein
TrEMBLA0A0A0LUQ10.0A0A0A0LUQ1_CUCSA; Uncharacterized protein
STRINGXP_004146371.10.0(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF52753349
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29940.11e-157pathogenesis related homeodomain protein A
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]