PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla018821
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family ARR-B
Protein Properties Length: 331aa    MW: 37938.1 Da    PI: 6.5137
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla018821genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like63.24.8e-20247296151
    G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQ 51 
                k r+ Wt+eLHe+Fvea e+L G+++ +P +il+lm+ ++Lt+e+v+SHLQ
  Cla018821 247 KHRVSWTKELHEKFVEAYEKL-GEKERVPNNILKLMNDPSLTRENVASHLQ 296
                68*******************.99999************************ PP

2Response_reg69.41.5e-23761841109
                   EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTES CS
  Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGak 95 
                   vl +d + + ++ l q+l+k +y +v+++++++ea++llk+++  +Dl+++D+   +mdG++ll+ i +e  ++p+++v+a++e e++++ +  Ga+
     Cla018821  76 VLAIDANIVCLHYLVQLLQKCQY-KVTATTKASEAIKLLKDEKqtFDLVITDVVRHDMDGFKLLQIIGFEM-DIPVVMVSANDELETVKRGVMEGAE 170
                   677888889999***********.***************777777**********************9966.9************************ PP

                   EEEESS--HHHHHH CS
  Response_reg  96 dflsKpfdpeelvk 109
                   d+l Kp+ ++el++
     Cla018821 171 DYLLKPVRIQELRN 184
                   ************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.23009.9E-3473216No hitNo description
SMARTSM004482.3E-2174186IPR001789Signal transduction response regulator, receiver domain
SuperFamilySSF521722.13E-2974206IPR011006CheY-like superfamily
PROSITE profilePS5011033.86375190IPR001789Signal transduction response regulator, receiver domain
PfamPF000722.9E-1976185IPR001789Signal transduction response regulator, receiver domain
CDDcd001568.66E-2177190No hitNo description
PROSITE profilePS5129410.372244303IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.2E-20244296IPR009057Homeodomain-like
SuperFamilySSF466891.79E-13245296IPR009057Homeodomain-like
TIGRFAMsTIGR015571.3E-17247296IPR006447Myb domain, plants
PfamPF002491.1E-7249297IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 331 aa     Download sequence    Send to blast
MFGLRFELFK FAVCTVTTRR SLLVPVVAGD LAVPCPATCL NFGFEIGNIM EDFDNQIPNP  60
IPLKAEDDHF PIGLKVLAID ANIVCLHYLV QLLQKCQYKV TATTKASEAI KLLKDEKQTF  120
DLVITDVVRH DMDGFKLLQI IGFEMDIPVV MVSANDELET VKRGVMEGAE DYLLKPVRIQ  180
ELRNIWQHVL RKRSARKRSN PNLLLLEQAV VQDEDHNSIE RVTISMDKLD YENDQIVKLD  240
DDNKKKKHRV SWTKELHEKF VEAYEKLGEK ERVPNNILKL MNDPSLTREN VASHLQSKQH  300
LLLGPHFPTI LLLQDNVLKC NLMRATPSEA Y
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins (By similarity). Functions as a response regulator in response to cytokinins (PubMed:22383541). {ECO:0000250|UniProtKB:Q940D0, ECO:0000269|PubMed:22383541}.
UniProtTranscriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011648495.11e-109PREDICTED: two-component response regulator ARR10-like
SwissprotB8B3I41e-63ORR22_ORYSI; Two-component response regulator ORR22
SwissprotQ5SML51e-63ORR22_ORYSJ; Two-component response regulator ORR22
TrEMBLA0A0A0LU421e-109A0A0A0LU42_CUCSA; Uncharacterized protein
STRINGXP_008453705.11e-106(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1955035
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G25180.12e-62response regulator 12
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]