PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cla018821 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
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Family | ARR-B | ||||||||
Protein Properties | Length: 331aa MW: 37938.1 Da PI: 6.5137 | ||||||||
Description | ARR-B family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 63.2 | 4.8e-20 | 247 | 296 | 1 | 51 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQ 51 k r+ Wt+eLHe+Fvea e+L G+++ +P +il+lm+ ++Lt+e+v+SHLQ Cla018821 247 KHRVSWTKELHEKFVEAYEKL-GEKERVPNNILKLMNDPSLTRENVASHLQ 296 68*******************.99999************************ PP | |||||||
2 | Response_reg | 69.4 | 1.5e-23 | 76 | 184 | 1 | 109 |
EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTES CS Response_reg 1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGak 95 vl +d + + ++ l q+l+k +y +v+++++++ea++llk+++ +Dl+++D+ +mdG++ll+ i +e ++p+++v+a++e e++++ + Ga+ Cla018821 76 VLAIDANIVCLHYLVQLLQKCQY-KVTATTKASEAIKLLKDEKqtFDLVITDVVRHDMDGFKLLQIIGFEM-DIPVVMVSANDELETVKRGVMEGAE 170 677888889999***********.***************777777**********************9966.9************************ PP EEEESS--HHHHHH CS Response_reg 96 dflsKpfdpeelvk 109 d+l Kp+ ++el++ Cla018821 171 DYLLKPVRIQELRN 184 ************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.40.50.2300 | 9.9E-34 | 73 | 216 | No hit | No description |
SMART | SM00448 | 2.3E-21 | 74 | 186 | IPR001789 | Signal transduction response regulator, receiver domain |
SuperFamily | SSF52172 | 2.13E-29 | 74 | 206 | IPR011006 | CheY-like superfamily |
PROSITE profile | PS50110 | 33.863 | 75 | 190 | IPR001789 | Signal transduction response regulator, receiver domain |
Pfam | PF00072 | 2.9E-19 | 76 | 185 | IPR001789 | Signal transduction response regulator, receiver domain |
CDD | cd00156 | 8.66E-21 | 77 | 190 | No hit | No description |
PROSITE profile | PS51294 | 10.372 | 244 | 303 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.2E-20 | 244 | 296 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.79E-13 | 245 | 296 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.3E-17 | 247 | 296 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 1.1E-7 | 249 | 297 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000160 | Biological Process | phosphorelay signal transduction system | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 331 aa Download sequence Send to blast |
MFGLRFELFK FAVCTVTTRR SLLVPVVAGD LAVPCPATCL NFGFEIGNIM EDFDNQIPNP 60 IPLKAEDDHF PIGLKVLAID ANIVCLHYLV QLLQKCQYKV TATTKASEAI KLLKDEKQTF 120 DLVITDVVRH DMDGFKLLQI IGFEMDIPVV MVSANDELET VKRGVMEGAE DYLLKPVRIQ 180 ELRNIWQHVL RKRSARKRSN PNLLLLEQAV VQDEDHNSIE RVTISMDKLD YENDQIVKLD 240 DDNKKKKHRV SWTKELHEKF VEAYEKLGEK ERVPNNILKL MNDPSLTREN VASHLQSKQH 300 LLLGPHFPTI LLLQDNVLKC NLMRATPSEA Y |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins (By similarity). Functions as a response regulator in response to cytokinins (PubMed:22383541). {ECO:0000250|UniProtKB:Q940D0, ECO:0000269|PubMed:22383541}. | |||||
UniProt | Transcriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011648495.1 | 1e-109 | PREDICTED: two-component response regulator ARR10-like | ||||
Swissprot | B8B3I4 | 1e-63 | ORR22_ORYSI; Two-component response regulator ORR22 | ||||
Swissprot | Q5SML5 | 1e-63 | ORR22_ORYSJ; Two-component response regulator ORR22 | ||||
TrEMBL | A0A0A0LU42 | 1e-109 | A0A0A0LU42_CUCSA; Uncharacterized protein | ||||
STRING | XP_008453705.1 | 1e-106 | (Cucumis melo) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF19550 | 3 | 5 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G25180.1 | 2e-62 | response regulator 12 |
Publications ? help Back to Top | |||
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