PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla018819
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family ARR-B
Protein Properties Length: 381aa    MW: 43411.1 Da    PI: 4.7699
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla018819genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like59.29e-19203252151
    G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQ 51 
                k+r+ Wt+eLHe+Fvea eqL  +++ +P +il+lm+ ++Lt+e+v+SHLQ
  Cla018819 203 KQRVSWTKELHEKFVEAYEQL-REKERVPNNILKLMNDPSLTRENVASHLQ 252
                79*******************.88889***********************9 PP
2Response_reg63.88.5e-22281341109
                   EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTESEE CS
  Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekdpDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGakdf 97 
                   vl +d + + ++ l ++l+k +y +v +++++ ea++l+k++++Dl+++ +   +mdG+++l+ i   ++++p+++v+a++e e++++ +  Ga+d+
     Cla018819  28 VLAIDANIVCLHYLVRLLQKCQY-KVSATTEAAEAIRLIKDEKFDLVITNVIRHDMDGFKILQIIGV-GMDIPVVMVSANDELETVKRGVMEGAEDY 122
                   6778888899999**********.***************************************9955.458************************** PP

                   EESS--HHHHHH CS
  Response_reg  98 lsKpfdpeelvk 109
                   l Kp+ ++el++
     Cla018819 123 LLKPVRIQELRN 134
                   *********997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.23005.3E-3225168No hitNo description
SMARTSM004483.5E-1926136IPR001789Signal transduction response regulator, receiver domain
SuperFamilySSF521727.83E-2926156IPR011006CheY-like superfamily
PROSITE profilePS5011032.72927140IPR001789Signal transduction response regulator, receiver domain
PfamPF000724.4E-1828135IPR001789Signal transduction response regulator, receiver domain
CDDcd001562.24E-2229140No hitNo description
Gene3DG3DSA:1.10.10.601.1E-19201252IPR009057Homeodomain-like
SuperFamilySSF466894.12E-13201252IPR009057Homeodomain-like
TIGRFAMsTIGR015575.7E-16203252IPR006447Myb domain, plants
PfamPF002495.0E-6205252IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 381 aa     Download sequence    Send to blast
MEDFDNSIPN PIPLKSEEDD QFPIGLKVLA IDANIVCLHY LVRLLQKCQY KVSATTEAAE  60
AIRLIKDEKF DLVITNVIRH DMDGFKILQI IGVGMDIPVV MVSANDELET VKRGVMEGAE  120
DYLLKPVRIQ ELRNIWQHVL RKRSARKRSN PNLLLLEQAV VQDEDHNSIE RVTISMDKLD  180
YENDQIVKLD DINIVASSSS KKKQRVSWTK ELHEKFVEAY EQLREKERVP NNILKLMNDP  240
SLTRENVASH LQFPNRARSS MEGLQGIQNP QSTWTAAGSC FPLPEFKWFN FPSNNSISNP  300
CDDNEQHFGG FDPININSTY YPPLETNCNN LNAYNSPSFV GNYAIENHNY VDAGQCYPMQ  360
FNAGNSLGSL LMDDDLADIF K
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1222227LREKER
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818131e-33LN681813.1 Cucumis melo genomic scaffold, anchoredscaffold00030.
GenBankLN7132561e-33LN713256.1 Cucumis melo genomic chromosome, chr_2.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011648496.11e-155PREDICTED: two-component response regulator ARR10-like
TrEMBLA0A0A0LU421e-159A0A0A0LU42_CUCSA; Uncharacterized protein
STRINGXP_008453705.11e-155(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1955035
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G25180.12e-59response regulator 12