PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla018733
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family WRKY
Protein Properties Length: 513aa    MW: 55676.6 Da    PI: 7.1878
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla018733genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY71.98.5e-23202258259
                --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
       WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                +DgynWrKYGqK+vk+ + +rsYY+Ct+++C +kk +e++++ ++ + ++Y++eH h+
  Cla018733 202 SDGYNWRKYGQKQVKSPKGSRSYYKCTYSECFAKK-IECCDHSGHRTGTVYKSEHSHD 258
                7********************************98.*********************7 PP
2WRKY98.83.6e-31376432359
                -SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
       WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                Dgy+WrKYGqK+vkg+++pr+YYrCtsagCpv+k++e + e+p++v+itY+g H+h+
  Cla018733 376 DGYRWRKYGQKMVKGNPHPRNYYRCTSAGCPVRKHIESAVENPNAVIITYKGVHDHD 432
                9*******************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.4E-19195260IPR003657WRKY domain
SuperFamilySSF1182909.29E-19199260IPR003657WRKY domain
SMARTSM007741.5E-20201259IPR003657WRKY domain
PROSITE profilePS5081117.603202260IPR003657WRKY domain
PfamPF031061.6E-15203258IPR003657WRKY domain
Gene3DG3DSA:2.20.25.804.4E-32359434IPR003657WRKY domain
PROSITE profilePS5081132.202369434IPR003657WRKY domain
SuperFamilySSF1182902.35E-27370434IPR003657WRKY domain
SMARTSM007742.1E-35374433IPR003657WRKY domain
PfamPF031067.1E-24376431IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 513 aa     Download sequence    Send to blast
MAERESFETD QLGSSKAATA GQEDDEEDME DSEDESEVEL EDGGGGGGSE LQPTELRTGS  60
WVSEAVVRGS RSETLTVPSA NQSSENGRSD GLPVNSAVQS LEGAELKQAP SSRNEQKAVE  120
ATQIDKVQEQ NQLQVSTFKG PGSDQSPTSV TQSISSSQSP SLSEHKLSPK KVQKECKPEP  180
SQKNSSNHKT ASSVPNVRTP ASDGYNWRKY GQKQVKSPKG SRSYYKCTYS ECFAKKIECC  240
DHSGHRTGTV YKSEHSHDPP RKISIPKESK LVPYVEPVVK KIIAEHSRRV INDSDPPTPS  300
KEPVRETAIV LERKRQHSSD SDGNDEFKIK DENGDGPETK QKVKKSSAGN SGTPLKPGKK  360
PKFVVHAAGD VGISGDGYRW RKYGQKMVKG NPHPRNYYRC TSAGCPVRKH IESAVENPNA  420
VIITYKGVHD HDMPVPKKRH GPPSAPLVAA AAPASMSNTQ PKKTDVVESQ ISSTQWSVDA  480
EGELTGEALE LGGEKAMESA RTLLSIGFEI KPC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A8e-26365434877Probable WRKY transcription factor 4
2lex_A8e-26365434877Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. {ECO:0000250|UniProtKB:Q9SI37}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGU9840090.0GU984009.1 Cucumis sativus WRKY protein (WRKY4) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023516366.10.0probable WRKY transcription factor 32
SwissprotP595831e-126WRK32_ARATH; Probable WRKY transcription factor 32
TrEMBLA0A1S3B8J50.0A0A1S3B8J5_CUCME; probable WRKY transcription factor 32
STRINGXP_008443858.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF51983456
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30935.11e-106WRKY DNA-binding protein 32