PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla018724
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family RAV
Protein Properties Length: 339aa    MW: 38497.3 Da    PI: 7.7331
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla018724genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP232.32.5e-104491154
        AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkle 54
               s++kGV    ++g W A+I+       + +r++lg+f +++eAa a++ a+ +++
  Cla018724 44 SKFKGVV-PQQNGHWGAQIYA------NhQRIWLGTFKSENEAAMAYDSAAIRIR 91
               799***6.666899****999......44**********************9987 PP
2B383.81.6e-26167265186
                EEEE-..-HHHHTT-EE--HHH.HTT.............---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
         B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.............ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 
                f+k+ltpsdv+k++rlv+pkk+a ++               +  ++++l++ d+  r+W+++++y+k+s++yv+t+GW++Fvk+++Lk++D++ F+l +
  Cla018724 167 FQKELTPSDVGKLNRLVIPKKYAVKYfphisasamenveHADDDRDVQLVFFDKMLRQWKFRYCYWKSSQSYVFTRGWNRFVKEKQLKANDTIAFYLCE 265
                99*************************99999888766633333888999999999****************************************865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.65E-2344102No hitNo description
PfamPF008472.2E-54491IPR001471AP2/ERF domain
SuperFamilySSF541718.5E-1544101IPR016177DNA-binding domain
SMARTSM003805.0E-1845106IPR001471AP2/ERF domain
PROSITE profilePS5103216.60845100IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.109.7E-1745100IPR001471AP2/ERF domain
Gene3DG3DSA:2.40.330.107.2E-33161265IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.67E-27166266IPR015300DNA-binding pseudobarrel domain
CDDcd100179.72E-25166278No hitNo description
PROSITE profilePS5086313.014167282IPR003340B3 DNA binding domain
SMARTSM010191.3E-20167282IPR003340B3 DNA binding domain
PfamPF023625.0E-24167266IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 339 aa     Download sequence    Send to blast
MKQELSSTIS KTRVNAIGEA LDSSCITCPS PANGCSRQGR SLTSKFKGVV PQQNGHWGAQ  60
IYANHQRIWL GTFKSENEAA MAYDSAAIRI RSGDCHRNFP WTKFTIEEPN FQKLYTTEAL  120
LNMLKDGSYR TKFAEYLRDC SESAQTSASP SSEKVHNNGG TSIKQLFQKE LTPSDVGKLN  180
RLVIPKKYAV KYFPHISASA MENVEHADDD RDVQLVFFDK MLRQWKFRYC YWKSSQSYVF  240
TRGWNRFVKE KQLKANDTIA FYLCEAAKAS DSTTTFCVVD VKNRDNGGSL VENETTCSEL  300
QLDLRLEEVD ESVSPTHVDD ELKDDHEVKG FKLFGVHIK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A4e-271642725104B3 domain-containing transcription factor NGA1
5os9_B4e-271642725104B3 domain-containing transcription factor NGA1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818080.0LN681808.1 Cucumis melo genomic scaffold, anchoredscaffold00012.
GenBankLN7132560.0LN713256.1 Cucumis melo genomic chromosome, chr_2.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004146691.10.0PREDICTED: AP2/ERF and B3 domain-containing transcription factor At1g50680-like
RefseqXP_011655965.10.0PREDICTED: AP2/ERF and B3 domain-containing transcription factor At1g50680-like
RefseqXP_011655970.10.0PREDICTED: AP2/ERF and B3 domain-containing transcription factor At1g50680-like
SwissprotQ9C6P51e-105RAVL2_ARATH; AP2/ERF and B3 domain-containing transcription factor At1g50680
TrEMBLA0A0A0LTJ10.0A0A0A0LTJ1_CUCSA; DNA-binding protein RAV1
STRINGXP_004161873.10.0(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF50003156
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50680.11e-105RAV family protein