PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cla018604

Organism

Citrullus lanatus

Taxonomic ID

3654

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus

Family

Dof

Protein Properties

Length: 435aa MW: 47558 Da PI: 7.0372

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cla018604	genome	ICuGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	125.2	2.1e-39	103	163	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++k l+cprC+s++tkfCyynny+++qPr+fCkaC+ryWt+GG++rnvPvG+grrk+k+s Cla018604 103 PDKLLPCPRCKSMETKFCYYNNYNVNQPRHFCKACQRYWTAGGTMRNVPVGAGRRKSKNSA 163 78999****************************************************9876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	3.0E-30	90	160	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	3.9E-32	105	161	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.537	107	161	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	109	145	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 435 aa Download sequence Send to blast
MLDSKDPTIK LFGRNIPLSE DGEPPAILSR DFPSQKHAEP IKDDAVDDPE KPVDDSDDSR 60 NLEREEEASV NPKTPSIDEE TATPTNGEQE SEKPNSEKTL KKPDKLLPCP RCKSMETKFC 120 YYNNYNVNQP RHFCKACQRY WTAGGTMRNV PVGAGRRKSK NSASYYRHIT ISEALEAARI 180 EAPNGTHKPK FIGNNGRVLS FNLDAPSSDA VVGSVLNLAE NRVLSNGVKK FEEKGSEGCD 240 KSSSLSSMAV QSSSELKING FPSQISCLSG VPWPFIWNSS VPPPAFGPPG FPLSFFPAAP 300 WNCGVPGPWN TPWFSPQPEK SVRSDSEASS TLGKHQRDNE TAKEDAISSK EEGVKQRNGH 360 VLTPKTLRID DPSDAAKSSI WATLGIKNES ITGGKNLFKT FHPKGHEKVH VAEASSVLQA 420 NPAALSRSLV FHESS

Sequence ? help Back to Top

Protein Sequence Length: 435 aa Download sequence Send to blast

MLDSKDPTIK LFGRNIPLSE DGEPPAILSR DFPSQKHAEP IKDDAVDDPE KPVDDSDDSR  60
NLEREEEASV NPKTPSIDEE TATPTNGEQE SEKPNSEKTL KKPDKLLPCP RCKSMETKFC  120
YYNNYNVNQP RHFCKACQRY WTAGGTMRNV PVGAGRRKSK NSASYYRHIT ISEALEAARI  180
EAPNGTHKPK FIGNNGRVLS FNLDAPSSDA VVGSVLNLAE NRVLSNGVKK FEEKGSEGCD  240
KSSSLSSMAV QSSSELKING FPSQISCLSG VPWPFIWNSS VPPPAFGPPG FPLSFFPAAP  300
WNCGVPGPWN TPWFSPQPEK SVRSDSEASS TLGKHQRDNE TAKEDAISSK EEGVKQRNGH  360
VLTPKTLRID DPSDAAKSSI WATLGIKNES ITGGKNLFKT FHPKGHEKVH VAEASSVLQA  420
NPAALSRSLV FHESS

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681932	0.0	LN681932.1 Cucumis melo genomic scaffold, anchoredscaffold00001.
GenBank	LN713266	0.0	LN713266.1 Cucumis melo genomic chromosome, chr_12.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004137585.1	0.0	PREDICTED: cyclic dof factor 3-like
TrEMBL	A0A0A0LVJ4	0.0	A0A0A0LVJ4_CUCSA; DOF domain class transcription factor
STRING	XP_004137585.1	0.0	(Cucumis sativus)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF625	34	147

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G47500.1	1e-94	cycling DOF factor 3