PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla018601
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family M-type_MADS
Protein Properties Length: 286aa    MW: 31973.2 Da    PI: 5.0043
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla018601genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF66.33.2e-211053245
               ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
     SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
               + e++  rqvt+skRrngi+KKA EL +LCd+++ +++fs++gk
  Cla018601 10 KLESTGSRQVTYSKRRNGIMKKARELAILCDIDIVLLMFSPSGK 53
               5688999***********************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006624.376161IPR002100Transcription factor, MADS-box
SMARTSM004322.5E-29160IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.19E-22265IPR002100Transcription factor, MADS-box
PRINTSPR004042.8E-18323IPR002100Transcription factor, MADS-box
PfamPF003195.0E-201254IPR002100Transcription factor, MADS-box
PRINTSPR004042.8E-182338IPR002100Transcription factor, MADS-box
PRINTSPR004042.8E-183859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 286 aa     Download sequence    Send to blast
MGRVKLKIKK LESTGSRQVT YSKRRNGIMK KARELAILCD IDIVLLMFSP SGKPALYEGE  60
RRKMESLECS SYPFSYWRNP DSINNIEQLQ QMEDLIRESL NQTRLHKYPG GGMSLPLLMD  120
EMQGTQPLLW LPSYSTQQIT LPNEPSFLQP GDVECSFPSY PSFFNPGNKT EAGISGQVDS  180
MPQGDGALNE LSGTSCSTLQ LGDQYPYPTC DGSSFQDEKK LKIEMEMNLH ATCVDTQLNG  240
KLELSRSLYD DDQYPWAAIP GPCSIPMYQS NAYHHVGSLL TGPSTT
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6819321e-180LN681932.1 Cucumis melo genomic scaffold, anchoredscaffold00001.
GenBankLN7132661e-180LN713266.1 Cucumis melo genomic chromosome, chr_12.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008443475.11e-178PREDICTED: agamous-like MADS-box protein AGL65 isoform X1
RefseqXP_008443550.11e-178PREDICTED: agamous-like MADS-box protein AGL65 isoform X2
TrEMBLA0A1S3B7U61e-177A0A1S3B7U6_CUCME; agamous-like MADS-box protein AGL65 isoform X2
TrEMBLA0A1S3B8V81e-176A0A1S3B8V8_CUCME; agamous-like MADS-box protein AGL65 isoform X1
STRINGXP_008443475.11e-177(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF27503370
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G18750.13e-45AGAMOUS-like 65