PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cla018555 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
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Family | TCP | ||||||||
Protein Properties | Length: 209aa MW: 23699.4 Da PI: 9.5856 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 85.1 | 1.7e-26 | 40 | 124 | 3 | 83 |
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt....ssssaseceaesssssas 83 g+kdrhsk++T +g+RdRR+Rls+++a++++dLq++LG+ ++sk i+WL+ +i++l+ + +++++ + ++ss + Cla018555 40 GGKDRHSKVCTIKGLRDRRIRLSVPTAIQLYDLQNKLGLSQPSKVIDWLIDVTRFEIDKLPPLhfpkDFDPNASILHHSSLLFPQ 124 78*************************************************************4444333332223333333333 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 9.9E-25 | 41 | 116 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 26.003 | 41 | 99 | IPR017887 | Transcription factor TCP subgroup |
Sequence ? help Back to Top |
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Protein Sequence Length: 209 aa Download sequence Send to blast |
MISKLKEEGV RDEAKQMEGK RKKAFLRGNP RIFRVSPLFG GKDRHSKVCT IKGLRDRRIR 60 LSVPTAIQLY DLQNKLGLSQ PSKVIDWLID VTRFEIDKLP PLHFPKDFDP NASILHHSSL 120 LFPQIPHFDI ADAAVKAKNE ETDHRLLLHK LSSLSALQVQ TNAINGNCCH FEPPSFPFPL 180 MDQINPVSFS FCPLTMPSEV SSYFPNGIN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zkt_A | 8e-19 | 46 | 100 | 1 | 55 | Putative transcription factor PCF6 |
5zkt_B | 8e-19 | 46 | 100 | 1 | 55 | Putative transcription factor PCF6 |
Search in ModeBase |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681932 | 1e-114 | LN681932.1 Cucumis melo genomic scaffold, anchoredscaffold00001. | |||
GenBank | LN713266 | 1e-114 | LN713266.1 Cucumis melo genomic chromosome, chr_12. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023519980.1 | 1e-109 | transcription factor TCP13-like | ||||
TrEMBL | A0A0A0LTI3 | 2e-84 | A0A0A0LTI3_CUCSA; Uncharacterized protein | ||||
TrEMBL | A0A1S3BEN2 | 3e-84 | A0A1S3BEN2_CUCME; transcription factor TCP5 | ||||
STRING | XP_008445912.1 | 4e-85 | (Cucumis melo) | ||||
STRING | XP_004137441.1 | 4e-85 | (Cucumis sativus) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF932 | 34 | 119 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60970.1 | 6e-41 | TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 5 |