PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cla018516 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
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Family | TCP | ||||||||
Protein Properties | Length: 235aa MW: 26945.5 Da PI: 10.6516 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 122.7 | 4.2e-38 | 11 | 159 | 3 | 131 |
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssg.............. 88 kkdrhski T++g RdRR+Rls+++a +fF Lqd LG+dk skt+eWLl qakp+i +l++ ss++ +++++s+ sa ++ss+ Cla018516 11 SKKDRHSKITTARGVRDRRMRLSLPVAQQFFGLQDLLGVDKGSKTVEWLLIQAKPEILKLARERSSNHFIMNNNASNHSAYSNSSEldevgviigdqdln 110 69*************************************************************6666644444444444443333356677888888888 PP TCP 89 ........kaaksaakskksqksaasalnlakesrakarararertrekmr 131 k++k+++k + +++ + +ake r+kar+rar rt ek++ Cla018516 111 tndnnikiKKKKKKKKMRANKQLPR--KTMAKELREKARERARARTLEKKN 159 8888876544444445555555555..89999**************99986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 1.0E-39 | 11 | 159 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 30.16 | 12 | 70 | IPR017887 | Transcription factor TCP subgroup |
PROSITE profile | PS51370 | 9.959 | 140 | 157 | IPR017888 | CYC/TB1, R domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:2000032 | Biological Process | regulation of secondary shoot formation | ||||
GO:0005634 | Cellular Component | nucleus |
Sequence ? help Back to Top |
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Protein Sequence Length: 235 aa Download sequence Send to blast |
MKKIPPRKRL SKKDRHSKIT TARGVRDRRM RLSLPVAQQF FGLQDLLGVD KGSKTVEWLL 60 IQAKPEILKL ARERSSNHFI MNNNASNHSA YSNSSELDEV GVIIGDQDLN TNDNNIKIKK 120 KKKKKKMRAN KQLPRKTMAK ELREKARERA RARTLEKKNQ IFIKDSCSDH PNFSKIISSS 180 SWSSPFETTG GEESAGTQSY NNNNLNLAIE WSPSDDSTFN FLHQQHEFED SDIFG |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 119 | 125 | KKKKKKK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that prevents axillary bud outgrowth and delays early axillary bud development. Indirectly required for the auxin-induced control of apical dominance. {ECO:0000269|PubMed:17307924, ECO:0000269|PubMed:17452340}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced during environmentally induced bud dormancy (planting density). Repressed transiently after shoot apical meristem (SAM) decapitation (release from apical dominance). {ECO:0000269|PubMed:17307924}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681932 | 1e-129 | LN681932.1 Cucumis melo genomic scaffold, anchoredscaffold00001. | |||
GenBank | LN713266 | 1e-129 | LN713266.1 Cucumis melo genomic chromosome, chr_12. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011650456.1 | 4e-97 | PREDICTED: transcription factor TCP18-like | ||||
Swissprot | A1YKT1 | 1e-31 | TCP18_ARATH; Transcription factor TCP18 | ||||
TrEMBL | A0A0A0LVQ1 | 8e-96 | A0A0A0LVQ1_CUCSA; Uncharacterized protein | ||||
STRING | XP_008456501.1 | 1e-48 | (Cucumis melo) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF6564 | 28 | 51 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18550.2 | 3e-27 | TCP family protein |