PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla018506
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family ERF
Protein Properties Length: 344aa    MW: 40002.9 Da    PI: 4.7823
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla018506genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP250.45.4e-16109156354
        AP2   3 ykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkkle 54 
                ykGVr++k +g+++AeIrd +     r +r +lg+++taeeAa a+ + + ++e
  Cla018506 109 YKGVRRRK-WGKYAAEIRDpF-----RgRRLWLGTYDTAEEAAFAYQRKKHEFE 156
                9****998.**********66.....56*****************988877765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541717.19E-18107165IPR016177DNA-binding domain
CDDcd000184.24E-22107150No hitNo description
Gene3DG3DSA:3.30.730.102.8E-21108164IPR001471AP2/ERF domain
PROSITE profilePS5103219.77108165IPR001471AP2/ERF domain
SMARTSM003803.6E-17108171IPR001471AP2/ERF domain
PRINTSPR003673.9E-9109120IPR001471AP2/ERF domain
PfamPF008478.4E-10109156IPR001471AP2/ERF domain
PRINTSPR003673.9E-9131147IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 344 aa     Download sequence    Send to blast
MSGFRRQFPI RDIYEKEDKK MKQLKEGKSI SVRKIRVLFH DPDATDYSSE EDEHVNRGAK  60
KIVWEIPLPD IHRKPSKESS QKERTDRGKF RTKTEAKESR RTQRSSSMYK GVRRRKWGKY  120
AAEIRDPFRG RRLWLGTYDT AEEAAFAYQR KKHEFESMQS MENYSSELSE EKSEEKKIRS  180
LVDDTAESEE IVAMFSHPSP SSVLDLCTGS LCSNGLKNAT EEFNVDQTMK HTITEKCMVV  240
LDGVEDMLES IYKDEQSISN ILEETRMPMP IPPLHACELD FQVLEDNALI CNDFDQLSDD  300
INYIDDCTLY NIENSLGALD LPPMDIEFDK EFSWFDETLS ISCM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A1e-14109164359ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A1e-14109164662ATERF1
3gcc_A1e-14109164662ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1109115KGVRRRK
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6819320.0LN681932.1 Cucumis melo genomic scaffold, anchoredscaffold00001.
GenBankLN7132660.0LN713266.1 Cucumis melo genomic chromosome, chr_12.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004137472.10.0PREDICTED: ethylene-responsive transcription factor CRF3-like
TrEMBLA0A0A0LTN00.0A0A0A0LTN0_CUCSA; Uncharacterized protein
STRINGXP_004161846.10.0(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF134512027
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68550.28e-23ERF family protein