PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla018458
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family WOX
Protein Properties Length: 400aa    MW: 44311.9 Da    PI: 5.0955
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla018458genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox68.86.9e-2282141357
                --SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
   Homeobox   3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 
                +R+++t+eql++Leel+++ +r+psa+++++++++l    +++ ++V++WFqN++a+e++
  Cla018458  82 SRWNPTPEQLRVLEELYRRgTRTPSADQIQHITAQLrrygKIEGKNVFYWFQNHKARERQ 141
                7*****************99**************************************97 PP
2Wus_type_Homeobox117.94.6e-3881143365
  Wus_type_Homeobox   3 rtRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 
                        ++RW+PtpeQ+++Leely++G+rtP++++iq+ita+L++yGkie+kNVfyWFQN+kaRerqk+
          Cla018458  81 SSRWNPTPEQLRVLEELYRRGTRTPSADQIQHITAQLRRYGKIEGKNVFYWFQNHKARERQKR 143
                        79***********************************************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003891.6E-579146IPR001356Homeobox domain
SuperFamilySSF466895.13E-1381148IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.605.5E-982141IPR009057Homeodomain-like
PfamPF000461.6E-1982141IPR001356Homeobox domain
CDDcd000862.35E-683143No hitNo description
PROSITE profilePS5007110.99787142IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048513Biological Processanimal organ development
GO:0099402Biological Processplant organ development
GO:0005829Cellular Componentcytosol
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 400 aa     Download sequence    Send to blast
MWMMGYNDAT DLNFPSDNSF NSRKLRPLIP RPLSSSSSSS INNLIPTNDF FSQFHHMATV  60
TDQSKRELNN VSSLSPPVVV SSRWNPTPEQ LRVLEELYRR GTRTPSADQI QHITAQLRRY  120
GKIEGKNVFY WFQNHKARER QKRRRQMESA ITAADLSTRD AEILERKDSG SGRTVYEEQT  180
KNWVPSTNCS TLPEESVPIQ RAAKGSVIGG ADCRTENGWI QFEELRQIRN NNTNNFAEKN  240
TNNINNINNS ASLQLMHCPA AALRGGGGGG GGGGSQLMMN IAPITTTATV TTIMHPKSHR  300
RSNISGNFNI IGAYTQNGVE ELEEIEEELE EEEEEEEEGG GGGGGGCGES ETLQLFPLCS  360
DTRNGETIGG QNGCETVENS AMNSTNLTPL QFFEFLPLKN
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6819322e-84LN681932.1 Cucumis melo genomic scaffold, anchoredscaffold00001.
GenBankLN7132662e-84LN713266.1 Cucumis melo genomic chromosome, chr_12.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016898802.11e-177PREDICTED: WUSCHEL-related homeobox 1-like
TrEMBLA0A0A0LVV61e-178A0A0A0LVV6_CUCSA; Uncharacterized protein
STRINGXP_008463696.11e-177(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF28923471
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18010.16e-44WUSCHEL related homeobox 1