PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cla018439 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
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Family | NF-X1 | ||||||||
Protein Properties | Length: 1106aa MW: 120960 Da PI: 8.0599 | ||||||||
Description | NF-X1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-NF-X1 | 21.9 | 3.8e-07 | 299 | 317 | 1 | 19 |
zf-NF-X1 1 CGkHkCqklCHeGpCppCp 19 CG+H+C+k+CH G C+pC+ Cla018439 299 CGRHRCEKICHVGTCDPCQ 317 ******************6 PP | |||||||
2 | zf-NF-X1 | 21.7 | 4.5e-07 | 421 | 438 | 1 | 18 |
zf-NF-X1 1 CGkHkCqklCHeGpCppC 18 CGkH+C+ CH G+C pC Cla018439 421 CGKHRCKDVCHAGDCAPC 438 ****************** PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57850 | 1.68E-5 | 121 | 191 | No hit | No description |
PROSITE profile | PS50016 | 8.564 | 129 | 190 | IPR019787 | Zinc finger, PHD-finger |
PROSITE profile | PS50089 | 9.524 | 132 | 188 | IPR001841 | Zinc finger, RING-type |
PROSITE pattern | PS01359 | 0 | 132 | 187 | IPR019786 | Zinc finger, PHD-type, conserved site |
CDD | cd06008 | 1.60E-5 | 221 | 282 | No hit | No description |
SMART | SM00438 | 0.039 | 244 | 262 | IPR000967 | Zinc finger, NF-X1-type |
Pfam | PF01422 | 1.8 | 246 | 261 | IPR000967 | Zinc finger, NF-X1-type |
CDD | cd06008 | 6.52E-11 | 289 | 337 | No hit | No description |
Pfam | PF01422 | 2.0E-5 | 299 | 316 | IPR000967 | Zinc finger, NF-X1-type |
SMART | SM00438 | 5.4E-4 | 299 | 318 | IPR000967 | Zinc finger, NF-X1-type |
CDD | cd06008 | 1.42E-8 | 353 | 396 | No hit | No description |
Pfam | PF01422 | 0.072 | 363 | 380 | IPR000967 | Zinc finger, NF-X1-type |
SMART | SM00438 | 0.024 | 363 | 382 | IPR000967 | Zinc finger, NF-X1-type |
CDD | cd06008 | 3.36E-13 | 411 | 459 | No hit | No description |
Pfam | PF01422 | 8.7E-6 | 421 | 438 | IPR000967 | Zinc finger, NF-X1-type |
SMART | SM00438 | 3.0E-4 | 421 | 440 | IPR000967 | Zinc finger, NF-X1-type |
Pfam | PF01422 | 18 | 479 | 490 | IPR000967 | Zinc finger, NF-X1-type |
Pfam | PF01422 | 0.085 | 511 | 535 | IPR000967 | Zinc finger, NF-X1-type |
CDD | cd06008 | 5.59E-7 | 511 | 550 | No hit | No description |
SMART | SM00438 | 0.015 | 517 | 536 | IPR000967 | Zinc finger, NF-X1-type |
CDD | cd06008 | 1.84E-5 | 564 | 612 | No hit | No description |
SMART | SM00438 | 6.2 | 574 | 592 | IPR000967 | Zinc finger, NF-X1-type |
Pfam | PF01422 | 3.6 | 582 | 591 | IPR000967 | Zinc finger, NF-X1-type |
Pfam | PF01422 | 0.0054 | 627 | 642 | IPR000967 | Zinc finger, NF-X1-type |
SMART | SM00438 | 0.15 | 627 | 657 | IPR000967 | Zinc finger, NF-X1-type |
CDD | cd06008 | 1.82E-4 | 655 | 704 | No hit | No description |
Pfam | PF01422 | 23 | 659 | 685 | IPR000967 | Zinc finger, NF-X1-type |
SMART | SM00438 | 0.2 | 666 | 687 | IPR000967 | Zinc finger, NF-X1-type |
Pfam | PF01424 | 9.2E-6 | 796 | 860 | IPR001374 | R3H domain |
Gene3D | G3DSA:3.30.70.330 | 6.1E-7 | 899 | 957 | IPR012677 | Nucleotide-binding alpha-beta plait domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009642 | Biological Process | response to light intensity | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0009697 | Biological Process | salicylic acid biosynthetic process | ||||
GO:0010188 | Biological Process | response to microbial phytotoxin | ||||
GO:0010310 | Biological Process | regulation of hydrogen peroxide metabolic process | ||||
GO:0042742 | Biological Process | defense response to bacterium | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0000166 | Molecular Function | nucleotide binding | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1106 aa Download sequence Send to blast |
MSSNVRNVRK DRSRFPASSA RQEWVPRGST TTTTTTTTTT TMTIHVDQPL NVNLNDNRNG 60 LEQNPSIPHP VYRDRGNHGP RVHVGPRRNQ RKDKEKDKEK SGDQGEKEVK ISNLPQLVHE 120 IQERLMKGTV ECMICYDMVR RSAPIWSCSS CFCIFHLTCI KKWARAPTST DLVAEKNQGL 180 NWRCPGCQSV QLTSSKEIRY VCFCGKRQDP PSDLYLTPHS CGEPCGKPLD REMLVAGGSK 240 EDLCPHNCVL QCHPGPCPPC KAFAPPRLCP CGKKLITTRC SDRKSILTCG QHCEKLLDCG 300 RHRCEKICHV GTCDPCQVLV SASCFCKKKK ELVLCGSMTL KGEVNTEDGV FPCSSICGKS 360 LNCSNHVCRE ICHPGPCGGC DLMPDMIKTC YCGKTQLQDE RTSCLDPIPT CSELCEKLLP 420 CGKHRCKDVC HAGDCAPCLV QVVQKCRCGS TSRNVECYKT SSPTDIFTCE KPCEWKKNCG 480 RHRCSERCCP LSNSSYNHLG DWDPHFCVMR CGKKLRCRQH SCQSLCHSGH CSPCPETIFT 540 DLTCACGKTS IPPPLPCGTP PPSCQLPCSV PQPCGHCSTH SCHFGDCPPC TVPIAKECIG 600 GHVVLRNIPC GSRDIRCNKL CGKTRQCGMH ACNRTCHPPP CDTAAGSDLG QKTSCGQTCG 660 APRRDCRHTC TVPCHPSAPC PDARCEFPVI ITCSCGRITA SVPCDAGGSS IGFNTDTLYA 720 SIIQKLPVPL QPIEATGKKI PLGQRKLTCD EECSKLERNR VLADAFDINP PNLDALHFGD 780 SSASELLADL FRRDSKWVLA VEERCKFLVL GKNRGAMSGL KVHVFCPMPK DKRDAVRLIA 840 ERWKLAINSV GWEPKRFITI QVTPKSKVPP RVLGIKGSTT TSTLHPQAYD PLVDMDPRLV 900 VSFPDLPRES DISALVLRFG GECELVWLND KNALAVFSDP ARAATAMRRL DHGTAYHGAS 960 ALQNSGASAS SNANAWGGGE YAKEGGASKS SNPWKRAVVQ DSSWKDTSWG DEEWSGPSID 1020 VQAPVWKREA PLSASLNRWH ALDTESAVSS STQSPEHNLS NRVGHSSSGS ESGTSRSMRS 1080 GGGMQVVADD GTNMSEVADD WEKAYD |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Mediates E2-dependent ubiquitination (By similarity). Confers resistance to osmotic stress such as high salinity. Promotes H(2)O(2) production. Negative regulator of some defense-related genes via an salicylic acid (SA)-dependent signaling pathway. Confers susceptibility to the compatible phytopathogen Pseudomonas syringae pv. tomato strain DC3000 (Pst DC3000). Mediates resistance to type A trichothecenes (phytotoxins produced by phytopathogenic fungi). {ECO:0000250, ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:18069941, ECO:0000269|PubMed:19704430}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By brassinosteroids, osmotic stress and high salinity. Accumulates in response to SA, ethylene, methyl jasmonate (MeJA), flagellin (e.g. flg22), and type A trichothecenes such as T-2 toxin and diacetoxyscirpenol (DAS), but not in response to type B trichothecenes such as deoxynivalenol (DON). {ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:18069941, ECO:0000269|PubMed:19704430}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681932 | 0.0 | LN681932.1 Cucumis melo genomic scaffold, anchoredscaffold00001. | |||
GenBank | LN713266 | 0.0 | LN713266.1 Cucumis melo genomic chromosome, chr_12. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011650913.1 | 0.0 | PREDICTED: NF-X1-type zinc finger protein NFXL1 | ||||
Swissprot | Q9SY59 | 0.0 | NFXL1_ARATH; NF-X1-type zinc finger protein NFXL1 | ||||
TrEMBL | A0A0A0LVX4 | 0.0 | A0A0A0LVX4_CUCSA; Uncharacterized protein | ||||
STRING | XP_008466671.1 | 0.0 | (Cucumis melo) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF6972 | 31 | 45 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G10170.1 | 0.0 | NF-X-like 1 |