PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla018439
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family NF-X1
Protein Properties Length: 1106aa    MW: 120960 Da    PI: 8.0599
Description NF-X1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla018439genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-NF-X121.93.8e-07299317119
   zf-NF-X1   1 CGkHkCqklCHeGpCppCp 19 
                CG+H+C+k+CH G C+pC+
  Cla018439 299 CGRHRCEKICHVGTCDPCQ 317
                ******************6 PP

2zf-NF-X121.74.5e-07421438118
   zf-NF-X1   1 CGkHkCqklCHeGpCppC 18 
                CGkH+C+  CH G+C pC
  Cla018439 421 CGKHRCKDVCHAGDCAPC 438
                ****************** PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF578501.68E-5121191No hitNo description
PROSITE profilePS500168.564129190IPR019787Zinc finger, PHD-finger
PROSITE profilePS500899.524132188IPR001841Zinc finger, RING-type
PROSITE patternPS013590132187IPR019786Zinc finger, PHD-type, conserved site
CDDcd060081.60E-5221282No hitNo description
SMARTSM004380.039244262IPR000967Zinc finger, NF-X1-type
PfamPF014221.8246261IPR000967Zinc finger, NF-X1-type
CDDcd060086.52E-11289337No hitNo description
PfamPF014222.0E-5299316IPR000967Zinc finger, NF-X1-type
SMARTSM004385.4E-4299318IPR000967Zinc finger, NF-X1-type
CDDcd060081.42E-8353396No hitNo description
PfamPF014220.072363380IPR000967Zinc finger, NF-X1-type
SMARTSM004380.024363382IPR000967Zinc finger, NF-X1-type
CDDcd060083.36E-13411459No hitNo description
PfamPF014228.7E-6421438IPR000967Zinc finger, NF-X1-type
SMARTSM004383.0E-4421440IPR000967Zinc finger, NF-X1-type
PfamPF0142218479490IPR000967Zinc finger, NF-X1-type
PfamPF014220.085511535IPR000967Zinc finger, NF-X1-type
CDDcd060085.59E-7511550No hitNo description
SMARTSM004380.015517536IPR000967Zinc finger, NF-X1-type
CDDcd060081.84E-5564612No hitNo description
SMARTSM004386.2574592IPR000967Zinc finger, NF-X1-type
PfamPF014223.6582591IPR000967Zinc finger, NF-X1-type
PfamPF014220.0054627642IPR000967Zinc finger, NF-X1-type
SMARTSM004380.15627657IPR000967Zinc finger, NF-X1-type
CDDcd060081.82E-4655704No hitNo description
PfamPF0142223659685IPR000967Zinc finger, NF-X1-type
SMARTSM004380.2666687IPR000967Zinc finger, NF-X1-type
PfamPF014249.2E-6796860IPR001374R3H domain
Gene3DG3DSA:3.30.70.3306.1E-7899957IPR012677Nucleotide-binding alpha-beta plait domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009642Biological Processresponse to light intensity
GO:0009651Biological Processresponse to salt stress
GO:0009697Biological Processsalicylic acid biosynthetic process
GO:0010188Biological Processresponse to microbial phytotoxin
GO:0010310Biological Processregulation of hydrogen peroxide metabolic process
GO:0042742Biological Processdefense response to bacterium
GO:0005634Cellular Componentnucleus
GO:0000166Molecular Functionnucleotide binding
GO:0003676Molecular Functionnucleic acid binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1106 aa     Download sequence    Send to blast
MSSNVRNVRK DRSRFPASSA RQEWVPRGST TTTTTTTTTT TMTIHVDQPL NVNLNDNRNG  60
LEQNPSIPHP VYRDRGNHGP RVHVGPRRNQ RKDKEKDKEK SGDQGEKEVK ISNLPQLVHE  120
IQERLMKGTV ECMICYDMVR RSAPIWSCSS CFCIFHLTCI KKWARAPTST DLVAEKNQGL  180
NWRCPGCQSV QLTSSKEIRY VCFCGKRQDP PSDLYLTPHS CGEPCGKPLD REMLVAGGSK  240
EDLCPHNCVL QCHPGPCPPC KAFAPPRLCP CGKKLITTRC SDRKSILTCG QHCEKLLDCG  300
RHRCEKICHV GTCDPCQVLV SASCFCKKKK ELVLCGSMTL KGEVNTEDGV FPCSSICGKS  360
LNCSNHVCRE ICHPGPCGGC DLMPDMIKTC YCGKTQLQDE RTSCLDPIPT CSELCEKLLP  420
CGKHRCKDVC HAGDCAPCLV QVVQKCRCGS TSRNVECYKT SSPTDIFTCE KPCEWKKNCG  480
RHRCSERCCP LSNSSYNHLG DWDPHFCVMR CGKKLRCRQH SCQSLCHSGH CSPCPETIFT  540
DLTCACGKTS IPPPLPCGTP PPSCQLPCSV PQPCGHCSTH SCHFGDCPPC TVPIAKECIG  600
GHVVLRNIPC GSRDIRCNKL CGKTRQCGMH ACNRTCHPPP CDTAAGSDLG QKTSCGQTCG  660
APRRDCRHTC TVPCHPSAPC PDARCEFPVI ITCSCGRITA SVPCDAGGSS IGFNTDTLYA  720
SIIQKLPVPL QPIEATGKKI PLGQRKLTCD EECSKLERNR VLADAFDINP PNLDALHFGD  780
SSASELLADL FRRDSKWVLA VEERCKFLVL GKNRGAMSGL KVHVFCPMPK DKRDAVRLIA  840
ERWKLAINSV GWEPKRFITI QVTPKSKVPP RVLGIKGSTT TSTLHPQAYD PLVDMDPRLV  900
VSFPDLPRES DISALVLRFG GECELVWLND KNALAVFSDP ARAATAMRRL DHGTAYHGAS  960
ALQNSGASAS SNANAWGGGE YAKEGGASKS SNPWKRAVVQ DSSWKDTSWG DEEWSGPSID  1020
VQAPVWKREA PLSASLNRWH ALDTESAVSS STQSPEHNLS NRVGHSSSGS ESGTSRSMRS  1080
GGGMQVVADD GTNMSEVADD WEKAYD
Functional Description ? help Back to Top
Source Description
UniProtMediates E2-dependent ubiquitination (By similarity). Confers resistance to osmotic stress such as high salinity. Promotes H(2)O(2) production. Negative regulator of some defense-related genes via an salicylic acid (SA)-dependent signaling pathway. Confers susceptibility to the compatible phytopathogen Pseudomonas syringae pv. tomato strain DC3000 (Pst DC3000). Mediates resistance to type A trichothecenes (phytotoxins produced by phytopathogenic fungi). {ECO:0000250, ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:18069941, ECO:0000269|PubMed:19704430}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By brassinosteroids, osmotic stress and high salinity. Accumulates in response to SA, ethylene, methyl jasmonate (MeJA), flagellin (e.g. flg22), and type A trichothecenes such as T-2 toxin and diacetoxyscirpenol (DAS), but not in response to type B trichothecenes such as deoxynivalenol (DON). {ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:18069941, ECO:0000269|PubMed:19704430}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6819320.0LN681932.1 Cucumis melo genomic scaffold, anchoredscaffold00001.
GenBankLN7132660.0LN713266.1 Cucumis melo genomic chromosome, chr_12.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011650913.10.0PREDICTED: NF-X1-type zinc finger protein NFXL1
SwissprotQ9SY590.0NFXL1_ARATH; NF-X1-type zinc finger protein NFXL1
TrEMBLA0A0A0LVX40.0A0A0A0LVX4_CUCSA; Uncharacterized protein
STRINGXP_008466671.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF69723145
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10170.10.0NF-X-like 1