PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Cla018430 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
|
||||||||
Family | ZF-HD | ||||||||
Protein Properties | Length: 178aa MW: 19688.7 Da PI: 7.8656 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 89.1 | 4.2e-28 | 6 | 60 | 2 | 57 |
ZF-HD_dimer 2 ekvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrev 57 ++++Y+eCl+NhAaslG++a+DGCgEf+ + ++++ a+ l+CaACgCHRnFHR+ + Cla018430 6 SNYHYRECLRNHAASLGSYATDGCGEFTLD-DASSPANLLHCAACGCHRNFHRKVT 60 5789*************************8.77789999***************86 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04770 | 1.5E-24 | 8 | 60 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 2.4E-22 | 9 | 58 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 23.271 | 10 | 59 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
ProDom | PD125774 | 4.0E-17 | 10 | 58 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
SuperFamily | SSF46689 | 4.18E-16 | 94 | 162 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 4.6E-29 | 95 | 164 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01565 | 5.6E-29 | 103 | 161 | IPR006455 | Homeodomain, ZF-HD class |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 178 aa Download sequence Send to blast |
MDGENSNYHY RECLRNHAAS LGSYATDGCG EFTLDDASSP ANLLHCAACG CHRNFHRKVT 60 YIAGGGRSSA ATATDDDLMD YDRHAVVEYG ATDTERSGGG GSKKRFRTKF TADQKEKMLA 120 FAEKLGWKLQ RKDLDDEIER FCRSVGVTRQ VFKVWMHNHK NSFSSNSAST GNASSLTQ |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wh7_A | 1e-23 | 104 | 166 | 18 | 79 | ZF-HD homeobox family protein |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Essential protein. Putative transcription factor. |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | LN681932 | 0.0 | LN681932.1 Cucumis melo genomic scaffold, anchoredscaffold00001. | |||
GenBank | LN713266 | 0.0 | LN713266.1 Cucumis melo genomic chromosome, chr_12. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_004137520.1 | 1e-127 | PREDICTED: zinc-finger homeodomain protein 9-like | ||||
Refseq | XP_008467173.1 | 1e-127 | PREDICTED: zinc-finger homeodomain protein 9-like | ||||
Swissprot | Q9SB61 | 2e-45 | ZHD2_ARATH; Zinc-finger homeodomain protein 2 | ||||
TrEMBL | A0A0A0LQK4 | 1e-126 | A0A0A0LQK4_CUCSA; Zinc finger homeodomain protein SZF-HD1 | ||||
TrEMBL | A0A1S3CU70 | 1e-126 | A0A1S3CU70_CUCME; zinc-finger homeodomain protein 9-like | ||||
STRING | XP_008467173.1 | 1e-126 | (Cucumis melo) | ||||
STRING | XP_004137520.1 | 1e-126 | (Cucumis sativus) | ||||
STRING | XP_004174113.1 | 1e-126 | (Cucumis sativus) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF7982 | 28 | 44 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G24660.1 | 1e-38 | homeobox protein 22 |
Publications ? help Back to Top | |||
---|---|---|---|
|