PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Cla018410 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
|
||||||||
Family | NAC | ||||||||
Protein Properties | Length: 262aa MW: 30395.2 Da PI: 6.2571 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 144.5 | 5.9e-45 | 6 | 142 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk....leleevikevdiykvePwdLpk....kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 lppGfrF Pt+eelv++yL +k+eg + ++++i+ +diy+++PwdLpk ++k +e++w+fF++r++++a+g r++r+t+sgyWkatg+ + v Cla018410 6 LPPGFRFYPTEEELVSFYLYHKLEGGRedlnGVVDQIIPVLDIYQFNPWDLPKfageACKRDEEQWFFFIPRQESEARGGRPKRVTTSGYWKATGSPTYV 105 79************************956532234479999***********656766666888************************************ PP NAM 93 lsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 +s+ +++ +g+k+++vfy+grapkg kt+W m+ey+l Cla018410 106 YSSnNQKSIGVKRSMVFYNGRAPKGIKTQWKMNEYKL 142 *9967778***************************97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.96E-48 | 3 | 163 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 50.294 | 6 | 163 | IPR003441 | NAC domain |
Pfam | PF02365 | 4.7E-23 | 7 | 142 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 262 aa Download sequence Send to blast |
MGDCNLPPGF RFYPTEEELV SFYLYHKLEG GREDLNGVVD QIIPVLDIYQ FNPWDLPKFA 60 GEACKRDEEQ WFFFIPRQES EARGGRPKRV TTSGYWKATG SPTYVYSSNN QKSIGVKRSM 120 VFYNGRAPKG IKTQWKMNEY KLIAHPFPST TIPKLSLCRI YKKSKLVRAF DRRPPQPQIE 180 APIPMELTTS LHDDVGDQFV DDQKLLNPPI MATERPNSPE SFNYSSEDHH GESSTNNNNV 240 QLKMEVDNNE LVWDWNHLNW LE |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 1e-38 | 1 | 163 | 12 | 165 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 1e-38 | 1 | 163 | 12 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 1e-38 | 1 | 163 | 12 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 1e-38 | 1 | 163 | 12 | 165 | NO APICAL MERISTEM PROTEIN |
3swm_A | 1e-38 | 1 | 163 | 15 | 168 | NAC domain-containing protein 19 |
3swm_B | 1e-38 | 1 | 163 | 15 | 168 | NAC domain-containing protein 19 |
3swm_C | 1e-38 | 1 | 163 | 15 | 168 | NAC domain-containing protein 19 |
3swm_D | 1e-38 | 1 | 163 | 15 | 168 | NAC domain-containing protein 19 |
3swp_A | 1e-38 | 1 | 163 | 15 | 168 | NAC domain-containing protein 19 |
3swp_B | 1e-38 | 1 | 163 | 15 | 168 | NAC domain-containing protein 19 |
3swp_C | 1e-38 | 1 | 163 | 15 | 168 | NAC domain-containing protein 19 |
3swp_D | 1e-38 | 1 | 163 | 15 | 168 | NAC domain-containing protein 19 |
4dul_A | 1e-38 | 1 | 163 | 12 | 165 | NAC domain-containing protein 19 |
4dul_B | 1e-38 | 1 | 163 | 12 | 165 | NAC domain-containing protein 19 |
Search in ModeBase |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | LN681876 | 2e-99 | LN681876.1 Cucumis melo genomic scaffold, anchoredscaffold00068. | |||
GenBank | LN713262 | 2e-99 | LN713262.1 Cucumis melo genomic chromosome, chr_8. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_004143387.1 | 1e-160 | PREDICTED: NAC domain-containing protein 90-like | ||||
Refseq | XP_008462590.1 | 1e-159 | PREDICTED: NAC domain-containing protein 90-like | ||||
TrEMBL | A0A0A0KKJ2 | 1e-158 | A0A0A0KKJ2_CUCSA; Uncharacterized protein | ||||
TrEMBL | A0A1S3CHU2 | 1e-157 | A0A1S3CHU2_CUCME; NAC domain-containing protein 90-like | ||||
STRING | XP_008462590.1 | 1e-158 | (Cucumis melo) | ||||
STRING | XP_004143387.1 | 1e-159 | (Cucumis sativus) | ||||
STRING | XP_004171607.1 | 1e-159 | (Cucumis sativus) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF871 | 34 | 123 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G22380.1 | 3e-69 | NAC domain containing protein 90 |