PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla018372
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family ERF
Protein Properties Length: 191aa    MW: 20754.2 Da    PI: 4.2356
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla018372genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP251.33e-161666155
        AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
               ++y+GVr+++ +g+Wv+eIr+p+    +  r++lg+f  +e+Aa a++ a+++ +g
  Cla018372 16 PRYRGVRRRS-SGKWVSEIREPR----KpNRIWLGTFPPPEMAAIAYDVAALAVKG 66
               68*****888.8*********94....478*********************98766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.10E-301676No hitNo description
PfamPF008478.7E-101666IPR001471AP2/ERF domain
SuperFamilySSF541711.37E-191775IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.9E-281775IPR001471AP2/ERF domain
PROSITE profilePS5103222.011774IPR001471AP2/ERF domain
SMARTSM003809.4E-331780IPR001471AP2/ERF domain
PRINTSPR003671.8E-101829IPR001471AP2/ERF domain
PRINTSPR003671.8E-105676IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 191 aa     Download sequence    Send to blast
MFFSKTKSLN STPNPPRYRG VRRRSSGKWV SEIREPRKPN RIWLGTFPPP EMAAIAYDVA  60
ALAVKGPNAD LNFPNLASSL PVPASTAARD IQAAATSAAT AIGAAAATIG LDGNPANGST  120
REKEDEEGDE GEELVEGGFV DEDMIFDMPN ILMNMAEGML LTPPSFNFNI NAPNDYEYPP  180
TYTQDNLWEF P
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A3e-1417751473Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008462542.11e-95PREDICTED: ethylene-responsive transcription factor ERF024
SwissprotQ9SJR04e-46ERF24_ARATH; Ethylene-responsive transcription factor ERF024
TrEMBLA0A1S3CH572e-94A0A1S3CH57_CUCME; ethylene-responsive transcription factor ERF024
STRINGXP_008462542.14e-95(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF56232144
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G36450.11e-29ERF family protein