PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cla018360 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 233aa MW: 26793.1 Da PI: 6.0381 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 63.8 | 2.5e-20 | 77 | 130 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k+ +++++qle+Le+ F+++ +++ +++ +L+k+lgL+ rq+ vWFqNrRa++k Cla018360 77 KKKRLSQDQLEALERSFQEEVKLDPDRKMKLSKELGLQPRQIAVWFQNRRARWK 130 56679************************************************9 PP | |||||||
2 | HD-ZIP_I/II | 120.2 | 1e-38 | 76 | 168 | 1 | 93 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 +kk+rls++q+++LE+sF+ee kL+p+rK++l++eLglqprq+avWFqnrRAR+ktkqlE+ y++Lk+++d++++e+++L++ev +Lr+ l+e Cla018360 76 QKKKRLSQDQLEALERSFQEEVKLDPDRKMKLSKELGLQPRQIAVWFQNRRARWKTKQLEHLYDTLKQQFDNISKEKHNLQQEVIKLRSMLRE 168 69**************************************************************************************98875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.84E-19 | 68 | 134 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.086 | 72 | 132 | IPR001356 | Homeobox domain |
SMART | SM00389 | 8.8E-19 | 75 | 136 | IPR001356 | Homeobox domain |
CDD | cd00086 | 2.06E-17 | 76 | 133 | No hit | No description |
Pfam | PF00046 | 1.5E-17 | 77 | 130 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 1.3E-20 | 78 | 139 | IPR009057 | Homeodomain-like |
PRINTS | PR00031 | 3.7E-5 | 103 | 112 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 107 | 130 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 3.7E-5 | 112 | 128 | IPR000047 | Helix-turn-helix motif |
Pfam | PF02183 | 1.6E-8 | 132 | 166 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009965 | Biological Process | leaf morphogenesis | ||||
GO:0010434 | Biological Process | bract formation | ||||
GO:0010582 | Biological Process | floral meristem determinacy | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0048510 | Biological Process | regulation of timing of transition from vegetative to reproductive phase | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 233 aa Download sequence Send to blast |
MEWNNGKTFT PNFVSPPPHS SSSALLYNCN NYNCNFDHFP EVIDILNLSV QSVMETTTTK 60 KVAVEGEQSM VGGVDQKKKR LSQDQLEALE RSFQEEVKLD PDRKMKLSKE LGLQPRQIAV 120 WFQNRRARWK TKQLEHLYDT LKQQFDNISK EKHNLQQEVI KLRSMLREQA TRNQGSIGCT 180 DVSGEETTVE CTSVEILSCN NYIYNNVEDF NQISASAPPF WWGAEATHLP SYP |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 124 | 132 | RRARWKTKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor. {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00486 | DAP | Transfer from AT5G03790 | Download |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681876 | 3e-95 | LN681876.1 Cucumis melo genomic scaffold, anchoredscaffold00068. | |||
GenBank | LN713262 | 3e-95 | LN713262.1 Cucumis melo genomic chromosome, chr_8. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008462523.1 | 1e-121 | PREDICTED: homeobox-leucine zipper protein ATHB-22-like | ||||
Swissprot | Q9LZR0 | 5e-49 | ATB51_ARATH; Putative homeobox-leucine zipper protein ATHB-51 | ||||
TrEMBL | A0A1S3CIQ6 | 1e-120 | A0A1S3CIQ6_CUCME; homeobox-leucine zipper protein ATHB-22-like | ||||
STRING | XP_008462523.1 | 1e-121 | (Cucumis melo) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3394 | 34 | 66 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G03790.1 | 9e-51 | homeobox 51 |
Publications ? help Back to Top | |||
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