PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cla018219

Organism

Citrullus lanatus

Taxonomic ID

3654

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus

Family

Dof

Protein Properties

Length: 270aa MW: 29919.4 Da PI: 9.9034

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cla018219	genome	ICuGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	117.4	5.7e-37	62	120	3	61
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 e+alkcprC+stntkfCy+nnyslsqPr+fCk+CrryWt+GGalr vPvGgg r+n k+ Cla018219 62 ETALKCPRCESTNTKFCYFNNYSLSQPRHFCKTCRRYWTRGGALRSVPVGGGYRRNTKR 120 6789**************************************************99876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	4.0E-34	45	119	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	1.3E-31	64	119	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.612	65	119	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	67	103	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 270 aa Download sequence Send to blast
MVFPSIPSNY LDPTTTHQWH QQTASQQSGS SSFQLAGSPA PPQVRPVSMA DRARMANLPV 60 PETALKCPRC ESTNTKFCYF NNYSLSQPRH FCKTCRRYWT RGGALRSVPV GGGYRRNTKR 120 TKSTSKSPVN SQCQPTTTEV SGGEAMRLNY NNAISTQNEG AVDSTHHPIG IANFLGFDQI 180 QWRPQLQLHQ TQQSPLLVNS ARLLGNGGIE ASPSYSIVRQ IQKKMEATTK MEEDGQQVEM 240 NVAKPFWGVV GGSDHRHYWS GFNPSSSSHS

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681888	1e-110	LN681888.1 Cucumis melo genomic scaffold, anchoredscaffold00002.
GenBank	LN713262	1e-110	LN713262.1 Cucumis melo genomic chromosome, chr_8.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008447721.1	1e-159	PREDICTED: dof zinc finger protein DOF5.1-like
TrEMBL	A0A1S3BI28	1e-157	A0A1S3BI28_CUCME; dof zinc finger protein DOF5.1-like
STRING	XP_008447721.1	1e-158	(Cucumis melo)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF24775	3	3

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G55370.2	1e-45	OBF-binding protein 3