PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla018197
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family WRKY
Protein Properties Length: 330aa    MW: 35851.1 Da    PI: 9.0531
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla018197genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY101.35.7e-32169225258
                --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS CS
       WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnh 58 
                dDgy+WrKYGqK++k+s++prsYYrC+ ++C++kk+vers edp++++itYeg H h
  Cla018197 169 DDGYKWRKYGQKSIKNSPNPRSYYRCSNPRCSAKKQVERSIEDPDTFIITYEGLHLH 225
                8******************************************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081126.934163228IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.9E-29164225IPR003657WRKY domain
SuperFamilySSF1182901.07E-26166225IPR003657WRKY domain
SMARTSM007746.8E-36168227IPR003657WRKY domain
PfamPF031061.5E-25169225IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 330 aa     Download sequence    Send to blast
MGTAHVKASP HIHHSHLLHF ILSSSSSSSS SSSSSSSSSS SSSSSSSSSS SSSSPREPLG  60
AVPWSDTYNT VSDDHLLTLT GLLHDDDDAT ASSPLSKTSA TIQPPSSPCP VVRPTWGRQL  120
RTLRMRSPLP RDRKTCSPTL TFLILGSLNK VEHKYSLRIK SCGGNMVADD GYKWRKYGQK  180
SIKNSPNPRS YYRCSNPRCS AKKQVERSIE DPDTFIITYE GLHLHFAYPF FLMGQSPQVQ  240
SPTKKPKTID PEPEAYKSPT FLAPGPPLPD DPKEATGPQG LLEDMVPWMI RNPSTNHNAL  300
SNSSSCSSHR SPPMSPPSPS TCPTFIASCF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A4e-201672251371WRKY transcription factor 1
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818885e-82LN681888.1 Cucumis melo genomic scaffold, anchoredscaffold00002.
GenBankLN7132625e-82LN713262.1 Cucumis melo genomic chromosome, chr_8.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004142202.11e-117PREDICTED: probable WRKY transcription factor 49
TrEMBLA0A0A0L0Y81e-116A0A0A0L0Y8_CUCSA; Uncharacterized protein
STRINGXP_004142202.11e-117(Cucumis sativus)
STRINGXP_004164625.11e-117(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF71183449
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43290.13e-40WRKY DNA-binding protein 49