PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla018170
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family TALE
Protein Properties Length: 460aa    MW: 51922.6 Da    PI: 6.8992
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla018170genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox29.11.7e-092863231954
                HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
   Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                Fe   ++yp+ +++  LA+++gL+ +qV++WF N R +
  Cla018170 286 FEHflHPYPTDTDKLMLANQTGLSRSQVSNWFINARVR 323
                564459******************************88 PP
2BELL88.19.3e-29166234472
       BELL   4 elqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                e +  k++L+++l+eV++rYk y++q+q+v+  Fe +aglg+a+pY++lA ka+ +hF+ Lk+aia+q+
  Cla018170 166 ETHTTKSRLITMLHEVYRRYKLYYQQMQAVVTTFEYAAGLGNAAPYANLAVKAMFKHFKFLKNAIADQL 234
                67889**************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005742.6E-23107232IPR006563POX domain
PfamPF075262.4E-28115231IPR006563POX domain
PROSITE profilePS5007111.985264327IPR001356Homeobox domain
CDDcd000861.33E-12267328No hitNo description
SMARTSM003895.0E-10267331IPR001356Homeobox domain
SuperFamilySSF466893.29E-17269334IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.3E-27270331IPR009057Homeodomain-like
PfamPF059202.5E-18284323IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 460 aa     Download sequence    Send to blast
MAEGFEVYHV PQQSRRDKLR VGIGIGTTNS TNSINHHNNF FPLYDDPSSF ISSDFDFHQN  60
PSFQLYHHHN YPPTSAVTAA ALHHHLPPLL SEQQPPLSLD LNLQHRYAYH STLPLQASKF  120
FKPAQQLLHD LFDYAPHNSS DKLLPDSALL DTLEGDIPPA ADDGFETHTT KSRLITMLHE  180
VYRRYKLYYQ QMQAVVTTFE YAAGLGNAAP YANLAVKAMF KHFKFLKNAI ADQLQFNKQH  240
QPPSYNPYFQ RSINNHGAGF VDHQPVWRPQ RGLPESAVTV LRAWLFEHFL HPYPTDTDKL  300
MLANQTGLSR SQVSNWFINA RVRLWKPMVE EIHMLETRQA QKSQQKEAND NNASNNNNDH  360
LSSTNESLLK PDGHNNNNAS SSNHDHHPLD LSNTHFFPTH HPHAAAGATA IGGSGNVSLT  420
LGLHQNHGGI TLTEPFPINA AQHFNLGLEA NGEGFVNEWF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3k2a_A1e-15273331563Homeobox protein Meis2
3k2a_B1e-15273331563Homeobox protein Meis2
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that is involved in the preservation of the spiral phyllotactic arrangement leading to a regular pattern of organ initiation. Required for maintenance of stem cell fate in the shoot apical meristem, and is essential for specifying floral primordia and establishing early internode patterning events during inflorescence development. Acts as transcription repressor of AG expression in floral and inflorescence meristems. Is also responsive of the nuclear import of SHOOT MERISTEMLESS (STM). In the fruit, plays a central role in patterning by negatively regulating SHP expression in order to prevent replum cells from adopting a valve margin cell fate. {ECO:0000269|PubMed:12874117, ECO:0000269|PubMed:12897247, ECO:0000269|PubMed:13678595, ECO:0000269|PubMed:15019989, ECO:0000269|PubMed:15120075, ECO:0000269|PubMed:15155890, ECO:0000269|PubMed:16741748}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818881e-106LN681888.1 Cucumis melo genomic scaffold, anchoredscaffold00002.
GenBankLN7132621e-106LN713262.1 Cucumis melo genomic chromosome, chr_8.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022978165.10.0BEL1-like homeodomain protein 9
SwissprotQ9LZM82e-79BLH9_ARATH; BEL1-like homeodomain protein 9
TrEMBLA0A0A0KZQ80.0A0A0A0KZQ8_CUCSA; Uncharacterized protein
STRINGXP_004142184.10.0(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF28103373
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G02030.11e-76TALE family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Pabón-Mora N,Wong GK,Ambrose BA
    Evolution of fruit development genes in flowering plants.
    Front Plant Sci, 2014. 5: p. 300
    [PMID:25018763]
  3. Khan M, et al.
    Repression of Lateral Organ Boundary Genes by PENNYWISE and POUND-FOOLISH Is Essential for Meristem Maintenance and Flowering in Arabidopsis.
    Plant Physiol., 2015. 169(3): p. 2166-86
    [PMID:26417006]
  4. Andrés F, et al.
    Floral Induction in Arabidopsis by FLOWERING LOCUS T Requires Direct Repression of BLADE-ON-PETIOLE Genes by the Homeodomain Protein PENNYWISE.
    Plant Physiol., 2015. 169(3): p. 2187-99
    [PMID:26417007]
  5. Bencivenga S,Serrano-Mislata A,Bush M,Fox S,Sablowski R
    Control of Oriented Tissue Growth through Repression of Organ Boundary Genes Promotes Stem Morphogenesis.
    Dev. Cell, 2016. 39(2): p. 198-208
    [PMID:27666746]
  6. Sehra B,Franks RG
    Redundant CArG Box Cis-motif Activity Mediates SHATTERPROOF2 Transcriptional Regulation during Arabidopsis thaliana Gynoecium Development.
    Front Plant Sci, 2017. 8: p. 1712
    [PMID:29085379]
  7. Simonini S,Stephenson P,Østergaard L
    A molecular framework controlling style morphology in Brassicaceae.
    Development, 2018.
    [PMID:29440299]