PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cla018121 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
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Family | MYB | ||||||||
Protein Properties | Length: 300aa MW: 34390.5 Da PI: 7.1912 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 28.1 | 4.6e-09 | 24 | 69 | 3 | 46 |
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqk 46 WT+eE +++ +a +++ + +W ++a++++ g+t +++ +q Cla018121 24 QWTPEENKRFENALALYDEDtsdRWLKVAAMIP-GKTIGDVIKQYQE 69 6********************************.*********9996 PP | |||||||
2 | Myb_DNA-binding | 46.6 | 8e-15 | 133 | 177 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE+ +++ + k++G+g+W+ I+r + ++Rt+ q+ s+ qky Cla018121 133 PWTEEEHRQFLMGLKKYGKGDWRNISRNFVTTRTPTQVASHAQKY 177 7*******************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 8.3E-4 | 18 | 69 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51293 | 5.887 | 20 | 75 | IPR017884 | SANT domain |
SMART | SM00717 | 5.2E-8 | 21 | 73 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 6.9E-11 | 23 | 77 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 1.3E-7 | 24 | 70 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.23E-6 | 25 | 70 | No hit | No description |
PROSITE profile | PS51294 | 20.282 | 126 | 182 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.0E-17 | 128 | 181 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.9E-17 | 129 | 181 | IPR006447 | Myb domain, plants |
SMART | SM00717 | 1.9E-12 | 130 | 180 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 9.2E-13 | 131 | 177 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.82E-11 | 133 | 178 | No hit | No description |
Pfam | PF00249 | 3.5E-12 | 133 | 177 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 300 aa Download sequence Send to blast |
MEFLSPASYL RNSNWLFQET KGTQWTPEEN KRFENALALY DEDTSDRWLK VAAMIPGKTI 60 GDVIKQYQEL EEDVSDIEAG LIPIRGYVNR DSFTLERVDS SHGFDGLSHF YGSGVKRGTS 120 TRPSDHERKK GIPWTEEEHR QFLMGLKKYG KGDWRNISRN FVTTRTPTQV ASHAQKYFIR 180 QLSGGKDKRR SSIHDITTVN LPDMKSPLGD GNRPPSPDPA AMATHLHQLS KMVGNAEQQF 240 DWKSSNQVLD SLNGNMFMVM PSNGTQQQEQ NLLKETIHES PNIAPYYTIF QMQPMHQHYH |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2cjj_A | 5e-13 | 22 | 87 | 8 | 73 | RADIALIS |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00296 | DAP | Transfer from AT2G38090 | Download |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681888 | 0.0 | LN681888.1 Cucumis melo genomic scaffold, anchoredscaffold00002. | |||
GenBank | LN713262 | 0.0 | LN713262.1 Cucumis melo genomic chromosome, chr_8. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008449196.1 | 0.0 | PREDICTED: transcription factor DIVARICATA-like | ||||
Swissprot | Q8S9H7 | 1e-102 | DIV_ANTMA; Transcription factor DIVARICATA | ||||
TrEMBL | A0A1S3BKW0 | 0.0 | A0A1S3BKW0_CUCME; transcription factor DIVARICATA-like | ||||
STRING | XP_008449196.1 | 0.0 | (Cucumis melo) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF466 | 34 | 162 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G38090.1 | 1e-113 | MYB family protein |
Publications ? help Back to Top | |||
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