PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cla017902

Organism

Citrullus lanatus

Taxonomic ID

3654

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus

Family

GRAS

Protein Properties

Length: 755aa MW: 85454.8 Da PI: 5.6987

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cla017902	genome	ICuGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	381.2	1.2e-116	380	751	1	374
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNq 100 l++lL++cA+av+++d+++a++lL++++++asp gd qRla++f+ +L+arla+++s++yk l ++ts +++l+a++l+ ++P+ k+s+++ N+ Cla017902 380 LRTLLISCAQAVAADDHRNASELLKQVRQHASPFGDGSQRLASCFADGLEARLAGTGSQIYKGLINKRTS---AADVLKAYHLYLAACPFRKISNFASNR 476 6789**********************************************************888888...89********************* PP GRAS 101 aIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkp 198 +I+ a+e+++++H++Df+i +G+QWp+L+q L+ R++gpp+lRiTg++ p++g +e++eetg+rLa +Ae+++vpfe+n+ +ak++e++++e+L++++ Cla017902 477 TIMIAAESATKLHVVDFGILYGFQWPTLIQRLSWRKDGPPKLRITGIEFPQPGfrPAERVEETGRRLAAYAESFNVPFEYNA-IAKKWETITVEDLNIDQ 575 ************************************************9*************************.7************ PP GRAS 199 gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvv 298 +E l+Vn+ ++ ++lldesv++es+r++vL+l+ ++sP++++ + +n++ F++rf eal ++sa+fd+le+ +pre+ er+ +Ere++gre+ nv+ Cla017902 576 DEFLVVNCLYRAKNLLDESVATESARNTVLRLIHKISPNLFISGVVNGAYNAPFFVTRFREALFHFSAIFDMLETVVPREDWERMLLEREIFGREALNVI 675 ************************************************************************************************ PP GRAS 299 acegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 aceg er+er et+++W+ r+++aGF ++p+ ++ + a +r + + + ++e+s ++++gWk+r ++++S+W+ Cla017902 676 ACEGWERVERPETYKQWQFRIMRAGFVQLPFHPEIFERAVEKVRSSYHRDFLIDEDSRWILQGWKGRIIYAISSWK 751 *******************************************999***********************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	67.303	354	731	IPR005202	Transcription factor GRAS
Pfam	PF03514	4.2E-114	380	751	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 755 aa Download sequence Send to blast
MTPDKELRKS GHYIDNCSFE VQAQESAHGR PKFQNTIFSH NFQEFDCLLP NPSPSNIASS 60 SSIITSSSND ASHEEDYLED CDFSDAVLTF INQILMEEDM EDKTCMLQDS LDLQAAEKSF 120 YEVLGKKYPP SPEPNRSLAD QYSDSLNEEL CGDSSNYRNG YSNTSYCGDD NPFQTVSEDI 180 LQIRSTLGDT ISPSSNSSSN SIISGADGWV EFSNNTIRVP EPNNRSQSIW QFQKGFEEAS 240 KFLPGGNKLC LDIEVNGSAT QGLDEGTSQV YLKAARKDQR NILSLESRGR KNPHDENGDL 300 EEERSSKQAA VFTESTLRSK MFDIVLLHSA GEGHERLVSF RQELHNAKIK SMLQSGQLKV 360 SNGGRGRRKK QSGKREVVDL RTLLISCAQA VAADDHRNAS ELLKQVRQHA SPFGDGSQRL 420 ASCFADGLEA RLAGTGSQIY KGLINKRTSA ADVLKAYHLY LAACPFRKIS NFASNRTIMI 480 AAESATKLHV VDFGILYGFQ WPTLIQRLSW RKDGPPKLRI TGIEFPQPGF RPAERVEETG 540 RRLAAYAESF NVPFEYNAIA KKWETITVED LNIDQDEFLV VNCLYRAKNL LDESVATESA 600 RNTVLRLIHK ISPNLFISGV VNGAYNAPFF VTRFREALFH FSAIFDMLET VVPREDWERM 660 LLEREIFGRE ALNVIACEGW ERVERPETYK QWQFRIMRAG FVQLPFHPEI FERAVEKVRS 720 SYHRDFLIDE DSRWILQGWK GRIIYAISSW KPSIE

Sequence ? help Back to Top

Protein Sequence Length: 755 aa Download sequence Send to blast

MTPDKELRKS GHYIDNCSFE VQAQESAHGR PKFQNTIFSH NFQEFDCLLP NPSPSNIASS  60
SSIITSSSND ASHEEDYLED CDFSDAVLTF INQILMEEDM EDKTCMLQDS LDLQAAEKSF  120
YEVLGKKYPP SPEPNRSLAD QYSDSLNEEL CGDSSNYRNG YSNTSYCGDD NPFQTVSEDI  180
LQIRSTLGDT ISPSSNSSSN SIISGADGWV EFSNNTIRVP EPNNRSQSIW QFQKGFEEAS  240
KFLPGGNKLC LDIEVNGSAT QGLDEGTSQV YLKAARKDQR NILSLESRGR KNPHDENGDL  300
EEERSSKQAA VFTESTLRSK MFDIVLLHSA GEGHERLVSF RQELHNAKIK SMLQSGQLKV  360
SNGGRGRRKK QSGKREVVDL RTLLISCAQA VAADDHRNAS ELLKQVRQHA SPFGDGSQRL  420
ASCFADGLEA RLAGTGSQIY KGLINKRTSA ADVLKAYHLY LAACPFRKIS NFASNRTIMI  480
AAESATKLHV VDFGILYGFQ WPTLIQRLSW RKDGPPKLRI TGIEFPQPGF RPAERVEETG  540
RRLAAYAESF NVPFEYNAIA KKWETITVED LNIDQDEFLV VNCLYRAKNL LDESVATESA  600
RNTVLRLIHK ISPNLFISGV VNGAYNAPFF VTRFREALFH FSAIFDMLET VVPREDWERM  660
LLEREIFGRE ALNVIACEGW ERVERPETYK QWQFRIMRAG FVQLPFHPEI FERAVEKVRS  720
SYHRDFLIDE DSRWILQGWK GRIIYAISSW KPSIE

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hyz_A	1e-46	384	751	8	375	GRAS family transcription factor containing protein, expressed
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in plant development. {ECO:0000250}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681841	0.0	LN681841.1 Cucumis melo genomic scaffold, anchoredscaffold00011.
GenBank	LN713258	0.0	LN713258.1 Cucumis melo genomic chromosome, chr_4.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008442537.1	0.0	PREDICTED: scarecrow-like protein 9
Refseq	XP_008442538.1	0.0	PREDICTED: scarecrow-like protein 9
Swissprot	O80933	0.0	SCL9_ARATH; Scarecrow-like protein 9
TrEMBL	A0A1S3B5F6	0.0	A0A1S3B5F6_CUCME; scarecrow-like protein 9
STRING	XP_008442537.1	0.0	(Cucumis melo)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF131	34	339

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G37650.1	0.0	GRAS family protein