PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cla017890

Organism

Citrullus lanatus

Taxonomic ID

3654

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus

Family

Dof

Protein Properties

Length: 350aa MW: 37180.3 Da PI: 9.8501

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cla017890	genome	ICuGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	123.9	5.3e-39	88	147	3	62
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 e+alkcprC+stntkfCy+nnysl+qPr+fCk+CrryWt+GGalrnvPvGgg+r+nk+s+ Cla017890 88 EAALKCPRCESTNTKFCYFNNYSLTQPRHFCKTCRRYWTRGGALRNVPVGGGCRRNKRSK 147 7789*****************************************************975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101447	2.88E-5	51	61	No hit	No description
ProDom	PD007478	5.0E-31	71	136	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	1.3E-32	90	145	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.544	91	145	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	93	129	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 350 aa Download sequence Send to blast
MKKENPEKHH EFFLHSPAYL DPSNWQQQVT HQVGSSSSTG VSSQLLPPPL PPPPPPPPPP 60 PHGVGGASSI RPGSMAERAR MANIPMPEAA LKCPRCESTN TKFCYFNNYS LTQPRHFCKT 120 CRRYWTRGGA LRNVPVGGGC RRNKRSKGSS SKSPPVSSDR QQTSGSGNSS SSAIASNNSG 180 GLSPQIPPLG RFMAPLHQQL SDFDIGGFSY GGGLSAAATA TGDLSFQLGN TTLAGGTSIG 240 SLLGFDQQWR LQQQPPQFPF LSGLDPFDGG SSSGGEGPGP GPGWQMRPKL PSSSRNVSQM 300 GNSVKMEETP DQVNNAGRQF LGNEQYWSSG SMAWSDLSGF SSSSSTRNPL

Sequence ? help Back to Top

Protein Sequence Length: 350 aa Download sequence Send to blast

MKKENPEKHH EFFLHSPAYL DPSNWQQQVT HQVGSSSSTG VSSQLLPPPL PPPPPPPPPP  60
PHGVGGASSI RPGSMAERAR MANIPMPEAA LKCPRCESTN TKFCYFNNYS LTQPRHFCKT  120
CRRYWTRGGA LRNVPVGGGC RRNKRSKGSS SKSPPVSSDR QQTSGSGNSS SSAIASNNSG  180
GLSPQIPPLG RFMAPLHQQL SDFDIGGFSY GGGLSAAATA TGDLSFQLGN TTLAGGTSIG  240
SLLGFDQQWR LQQQPPQFPF LSGLDPFDGG SSSGGEGPGP GPGWQMRPKL PSSSRNVSQM  300
GNSVKMEETP DQVNNAGRQF LGNEQYWSSG SMAWSDLSGF SSSSSTRNPL

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681841	0.0	LN681841.1 Cucumis melo genomic scaffold, anchoredscaffold00011.
GenBank	LN713258	0.0	LN713258.1 Cucumis melo genomic chromosome, chr_4.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022935138.1	1e-168	dof zinc finger protein DOF5.1-like
TrEMBL	A0A0A0LAK9	1e-158	A0A0A0LAK9_CUCSA; Uncharacterized protein
STRING	XP_004137942.1	1e-159	(Cucumis sativus)
STRING	XP_004173251.1	1e-159	(Cucumis sativus)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF656	34	143

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G02460.1	1e-39	Dof family protein