PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cla017846

Organism

Citrullus lanatus

Taxonomic ID

3654

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus

Family

NF-YB

Protein Properties

Length: 175aa MW: 18891.1 Da PI: 7.5729

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cla017846	genome	ICuGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	180.7	1.3e-56	24	118	1	95
NF-YB 1 vreqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyreleg 95 vreqdrflPian+srimkk+lPan+ki+kdaketvqecvsefisf+tseasdkcqrekrktingddllwa+atlGfedy++plk+yl+kyre ++ Cla017846 24 VREQDRFLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKTYLTKYREGDT 118 69*****************************************************************************************9665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	2.8E-54	19	132	IPR009072	Histone-fold
SuperFamily	SSF47113	1.71E-39	27	126	IPR009072	Histone-fold
Pfam	PF00808	2.1E-28	30	94	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
PRINTS	PR00615	3.1E-21	58	76	No hit	No description
PROSITE pattern	PS00685	0	61	77	IPR003956	Transcription factor, NFYB/HAP3, conserved site
PRINTS	PR00615	3.1E-21	77	95	No hit	No description
PRINTS	PR00615	3.1E-21	96	114	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0043565	Molecular Function	sequence-specific DNA binding
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 175 aa Download sequence Send to blast
MADAPASPGG GSHESGEQSP RSNVREQDRF LPIANISRIM KKALPANGKI AKDAKETVQE 60 CVSEFISFIT SEASDKCQRE KRKTINGDDL LWAMATLGFE DYIDPLKTYL TKYREGDTKG 120 SAKGGDASAK KEAHSTPISQ IAHQGSLSQG VNYASSQVLS LSLSLSQTLS NNNMH

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4awl_B	7e-48	23	115	2	94	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
4csr_A	7e-48	23	115	2	94	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
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Functional Description ? help Back to Top
Source	Description
UniProt	Component of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG003875	0.0	HG003875.1 Cucumis sativus mRNA for nuclear transcription factor Y subunit B-8-like, cultivar Summer Green.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001295779.1	1e-111	nuclear transcription factor Y subunit B-1
Refseq	XP_008442638.1	1e-111	PREDICTED: nuclear transcription factor Y subunit B-1 isoform X2
Refseq	XP_011651935.1	1e-111	PREDICTED: nuclear transcription factor Y subunit B-1 isoform X2
Swissprot	Q8VYK4	7e-79	NFYB8_ARATH; Nuclear transcription factor Y subunit B-8
TrEMBL	A0A1S3B658	1e-110	A0A1S3B658_CUCME; nuclear transcription factor Y subunit B-1 isoform X2
TrEMBL	S6DEZ2	1e-110	S6DEZ2_CUCSA; Nuclear transcription factor Y subunit B-8-like
STRING	XP_008442637.1	1e-109	(Cucumis melo)
STRING	XP_004137802.1	1e-109	(Cucumis sativus)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2545	33	82

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G37060.3	1e-80	nuclear factor Y, subunit B8

Publications ? help Back to Top
Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]