PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla017826
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family C2H2
Protein Properties Length: 493aa    MW: 53504.9 Da    PI: 9.7496
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla017826genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.23e-056890123
               EEETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
               + C++C+k F r  nL+ H r H
  Cla017826 68 FICEICNKGFQRDQNLQLHRRGH 90
               89*******************88 PP
2zf-C2H212.10.00058145167123
                EEETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                +kC +C+k +  +s+ k H +t+
  Cla017826 145 WKCDKCSKKYAVQSDWKAHSKTC 167
                58*****************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.601.3E-56790IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.6E-76790No hitNo description
SMARTSM003550.0226890IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.8456890IPR007087Zinc finger, C2H2
PfamPF121715.9E-56890IPR022755Zinc finger, double-stranded RNA binding
PROSITE patternPS0002807090IPR007087Zinc finger, C2H2
SMARTSM0035599110140IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.8E-4133166IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.6E-7140165No hitNo description
SMARTSM00355150145165IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 493 aa     Download sequence    Send to blast
MSSNPFSLLS STTTAAFAHQ HEDANPNPNP KPKPSAAAKK KRNLPGTPDP DAEVIALSPK  60
SLMATNRFIC EICNKGFQRD QNLQLHRRGH NLPWKLRQRT NKEPIKKKVY ICPEKMCVHH  120
DPSRALGDLT GIKKHFSRKH GEKKWKCDKC SKKYAVQSDW KAHSKTCGTR EYKCDCGTLF  180
SRKDSFITHR AFCDALAEES ARITTVSATN ILNNLRNDSN ILLHQQDQSL IDHHTNNNLP  240
SLGDISGLSQ FSHSDHFLRD FEDHQQKNRS PLSLWLNQAS AETAINNNNN NISNFFGASS  300
SSSNLFGSIT ENGLSMLPVI EKEDVENKGS NNLSKATSSS AAALLSGQSS QSVVSSSPMS  360
ATALLQKAAL MGSTRSNNNN SVLFGAGAFG VMSSSSSSSS NAVSLNSLNK SRSLTMADSV  420
QMIGTNSDLS SNCLSQLLIP PNANNGMRSS GQTRDFLGVG GGEAPRPPFL PPELAKFAAI  480
NSTMGLSQFA TNH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C3e-38141210372Zinc finger protein JACKDAW
5b3h_F3e-38141210372Zinc finger protein JACKDAW
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818410.0LN681841.1 Cucumis melo genomic scaffold, anchoredscaffold00011.
GenBankLN7132580.0LN713258.1 Cucumis melo genomic chromosome, chr_4.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004137968.10.0PREDICTED: protein indeterminate-domain 9
TrEMBLA0A0A0LDZ10.0A0A0A0LDZ1_CUCSA; Uncharacterized protein
STRINGXP_004137968.10.0(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18134275
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G45260.11e-99C2H2-like zinc finger protein